Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| P31649 | Slc6a13 | Sodium- and chloride-dependent GABA transporter … | Mus musculus (Mouse) | 602 aa |
Protein Details: P31649 (Slc6a13)
Protein Information
| Accession | P31649 |
|---|---|
| Protein Names | Sodium- and chloride-dependent GABA transporter 2 (GAT-2) (Sodium- and chloride-dependent GABA transporter 3) (GAT-3) (Solute carrier family 6 member 13) |
| Gene Symbol | Slc6a13 |
| Organism | Mus musculus (Mouse) |
| Length | 602 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 29733200 34884899 37925639 |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MENRASGTTS11NGETKPVCPA21MEKVEEDGTL31EREHWNNKME41FVLSVAGEII
51-10051GLGNVWRFPY61LCYKNGGGAF71FIPYLIFLFT81CGIPVFFLET91ALGQYTNQGG
101-150101ITAWRRICPI111FEGIGYASQM121IVSLLNVYYI131VVLAWALFYL141FSSFTTDLPW
151-200151GSCSHEWNTE161NCVEFQKAND171SMNVTSENAT181SPVIEFWERR191VLKLSDGIQH
201-250201LGSLRWELVL211CLLLAWIICY221FCIWKGVKST231GKVVYFTATF241PYLMLVVLLI
251-300251RGVTLPGAAQ261GIQFYLYPNI271TRLWDPQVWM281DAGTQIFFSF291AICLGCLTAL
301-350301GSYNKYHNNC311YRDCIALCIL321NSSTSFMAGF331AIFSILGFMS341QEQGVPISEV
351-400351AESGPGLAFI361AYPRAVVMLP371FSPLWACCFF381FMVVLLGLDS391QFVCVESLVT
401-450401ALVDMYPRVF411RKKNRREVLI421LIVSVISFFI431GLIMLTEGGM441YVFQLFDYYA
451-500451ASGMCLLFVA461IFESLCVAWV471YGAGRFYDNI481EDMIGYKPWP491LIKYCWLFFT
501-550501PAVCLATFLF511SLIKYTPLTY521NKKYTYPWWG531DALGWLLALS541SMICIPAWSI
551-600551YKLRTLKGPL561RERLRQLVCP571AEDLPQKNQP581EPTAPATPMT591SLLRLTELES
601-602601NC
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 18 | - | - | - |
Deep-Palm: 0.89
|
|
| 62 | SWISSPALM DBPTM CYSMODDB | Sodium:neurotransmitter symporter family |
Liver
(28526873)
|
Brain
(35358180)
|
GPS-Palm: 0.79
Deep-Palm: 0.89
|
| 81 | - | - | - |
Deep-Palm: 0.87
|
|
| 108 | - | - | - |
GPS-Palm: 0.90
Deep-Palm: 0.74
|
|
| 153 | - | - | - |
Deep-Palm: 0.08
|
|
| 162 | - | - | - |
Deep-Palm: 0.04
|
|
| 211 | - | - | - |
Deep-Palm: 0.54
|
|
| 219 | - | - | - |
GPS-Palm: 0.90
Deep-Palm: 0.93
|
|
| 222 | - | - | - |
GPS-Palm: 0.89
Deep-Palm: 0.93
|
|
| 293 | - | - | - |
GPS-Palm: 0.69
Deep-Palm: 0.08
|
|
| 296 | - | - | - |
GPS-Palm: 0.89
Deep-Palm: 0.05
|
|
| 310 | - | - | - |
Deep-Palm: 0.06
|
|
| 314 | - | - | - |
Deep-Palm: 0.05
|
|
| 318 | - | - | - |
Deep-Palm: 0.03
|
|
| 377 | - | - | - |
Deep-Palm: 0.41
|
|
| 378 | - | - | - |
Deep-Palm: 0.50
|
|
| 394 | - | - | - |
Deep-Palm: 0.37
|
|
| 455 | - | - | - |
Deep-Palm: 0.05
|
|
| 466 | - | - | - |
GPS-Palm: 0.86
Deep-Palm: 0.46
|
|
| 495 | - | - | - |
GPS-Palm: 0.66
Deep-Palm: 0.63
|
|
| 504 | - | - | - |
Deep-Palm: 0.30
|
|
| 544 | - | - | - |
GPS-Palm: 0.93
Deep-Palm: 0.94
|
|
| 569 | SWISSPALM DBPTM CYSMODDB | - |
Liver
(28526873)
| - |
GPS-Palm: 0.94
Deep-Palm: 0.98
|
| 602 | - | - | - |
GPS-Palm: 0.96
Deep-Palm: 0.03
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.833
5
Liver
Specificity: 0.833
5/5 (100.0%)
1
Brain
Specificity: 0.167
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.