Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| P35123 | Usp4 | Ubiquitin carboxyl-terminal hydrolase 4 (EC … | Mus musculus (Mouse) | 962 aa |
Protein Details: P35123 (Usp4)
Protein Information
| Accession | P35123 |
|---|---|
| Protein Names | Ubiquitin carboxyl-terminal hydrolase 4 (EC 3.4.19.12) (Deubiquitinating enzyme 4) (Ubiquitin thioesterase 4) (Ubiquitin-specific-processing protease 4) (Ubiquitous nuclear protein) |
| Gene Symbol | Usp4 |
| Organism | Mus musculus (Mouse) |
| Length | 962 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 35477839 37925639 |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MAEGRGSRER11PDVETQKTEL21GALMGTTLQR31GAQWYLIDSR41WFKQWKKYVG
51-10051FDSWDMYNVG61EHNLFPGPID71NSGLFSDPES81QTLKEHLIDE91LDYVLVPAEA
101-150101WNKLLNWYGC111VEGQQPIVRK121VVEHGLFVKH131CKVEVYLLEL141KLCENSDPTN
151-200151VLSCHFSKAD161TIATIEKEMR171KLFNIPAERE181TRLWNKYMSN191TYEQLSKLDN
201-250201TIQDAGLYQG211QVLVIEPQNE221DGTWPRQSLQ231SKSSTAPSRN241FTTSSKPSAS
251-300251PYCSVSASLI261ANGDSTNSSG271MHSSGVSRGG281SGFSASYNCQ291EPPSPHIQPG
301-350301LCGLGNLGNT311CFMNSALQCL321SNTAPLTEYF331LKDEYEAEIN341RDNPLGMKGE
351-400351IAEAYAELIK361QMWSGRDTHV371APRMFKTQVG381RFAPQFSGYQ391QQDSQELLAF
401-450401ILDGLHEDLN411RVKKKPYLEP421KDANGRPDAV431VAKEAWENHR441LRNDSVIVDT
451-500451FHGLFKSTLV461CPECAKVSVT471FDPFCYLTLP481LPLKKDRIME491VFLVPADPQC
501-550501RPIQYRVTVP511LMGAISDLCE521ALSKLSGIAA531ENMVVTDVYN541HRFHKIFQMD
551-600551EGLSHITPRD561DIFVYEVCNT571SMDGSECITL581PVYFREKKSR591PSSASSGAVL
601-650601YGQPLLVSVP611KHKLTLESLY621QAVCDRISRY631IKQPLPDEFL641SSPLEPGACN
651-700651GSRSSYEGDE661EEEMDHQEEG671KEQLSEVEGS681GEDDQGDDHS691ESAQKVKGQP
701-750701RHKRLFTFSL711VNSCGTADIN721SLATDGKLLK731LNSRSTLAID741WDSETRSLYF
751-800751DEQESEACEK761HLSMSQPQKK771KKAAVALREC781IELFTTMETL791GEHDPWYCPT
801-850801CKKHQQATKK811FDLWSLPKIL821VVHLKRFSYN831RYWRDKLDTV841VEFPVRALNM
851-900851SEFVCDRSAR861PYVYDLIAVS871NHYGAMGVGH881YTAYAKNRLN891GKWYYFDDSS
901-950901VSLASEDQIV911TKAAYVLFYQ921RRDDECSSTS931SLGSFPGSDG941GVKLSSSHQG
951-962951MGDEEAYNMD961TN
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 110 | - | - | - |
GPS-Palm: 0.84
Deep-Palm: 0.49
|
|
| 131 | - | - | - |
Deep-Palm: 0.90
|
|
| 143 | - | - | - |
Deep-Palm: 0.64
|
|
| 154 | - | - | - |
Deep-Palm: 0.66
|
|
| 253 | - | - | - |
Deep-Palm: 0.69
|
|
| 289 | - | - | - |
Deep-Palm: 0.67
|
|
| 302 | - | - | - |
Deep-Palm: 0.15
|
|
| 311 | - | - | - |
Deep-Palm: 0.46
|
|
| 319 | - | - | - |
Deep-Palm: 0.60
|
|
| 461 | - | - | - |
Deep-Palm: 0.06
|
|
| 464 | - | - | - |
Deep-Palm: 0.06
|
|
| 475 | - | - | - |
GPS-Palm: 0.74
Deep-Palm: 0.45
|
|
| 500 | - | - | - |
Deep-Palm: 0.75
|
|
| 519 | - | - | - |
GPS-Palm: 0.78
Deep-Palm: 0.97
|
|
| 568 | - | - | - |
Deep-Palm: 0.06
|
|
| 577 | - | - | - |
Deep-Palm: 0.42
|
|
| 624 | SWISSPALM DBPTM CYSMODDB | - |
Liver
(28526873)
| - |
GPS-Palm: 0.93
Deep-Palm: 0.95
|
| 649 | - | - | - |
Deep-Palm: 0.92
|
|
| 714 | - | - | - |
GPS-Palm: 0.72
Deep-Palm: 0.93
|
|
| 758 | - | - | - |
Deep-Palm: 0.57
|
|
| 780 | - | - | - |
GPS-Palm: 0.78
Deep-Palm: 0.95
|
|
| 798 | - | - | - |
Deep-Palm: 0.03
|
|
| 801 | - | - | - |
Deep-Palm: 0.02
|
|
| 855 | - | - | - |
GPS-Palm: 0.90
Deep-Palm: 0.77
|
|
| 926 | - | - | - |
Deep-Palm: 0.69
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.667
4
Liver
Specificity: 0.667
4/4 (100.0%)
2
Testis
Specificity: 0.333
2/2 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.