Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| P41233 | Abca1 | Phospholipid-transporting ATPase ABCA1 (EC 7.6.2.1) … | Mus musculus (Mouse) | 2261 aa |
Protein Details: P41233 (Abca1)
Protein Information
| Accession | P41233 |
|---|---|
| Protein Names | Phospholipid-transporting ATPase ABCA1 (EC 7.6.2.1) (ATP-binding cassette sub-family A member 1) (ATP-binding cassette transporter 1) (ABC-1) (ATP-binding cassette 1) |
| Gene Symbol | Abca1 |
| Organism | Mus musculus (Mouse) |
| Length | 2261 aa |
| Isoforms | No isoforms |
| Related PMIDs | 35477839 37925639 |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MACWPQLRLL11LWKNLTFRRR21QTCQLLLEVA31WPLFIFLILI41SVRLSYPPYE
51-10051QHECHFPNKA61MPSAGTLPWV71QGIICNANNP81CFRYPTPGEA91PGVVGNFNKS
101-150101IVSRLFSDAQ111RLLLYSQRDT121SIKDMHKVLR131MLRQIKHPNS141NLKLQDFLVD
151-200151NETFSGFLQH161NLSLPRSTVD171SLLQANVGLQ181KVFLQGYQLH191LASLCNGSKL
201-250201EEIIQLGDAE211VSALCGLPRK221KLDAAERVLR231YNMDILKPVV241TKLNSTSHLP
251-300251TQHLAEATTV261LLDSLGGLAQ271ELFSTKSWSD281MRQEVMFLTN291VNSSSSSTQI
301-350301YQAVSRIVCG311HPEGGGLKIK321SLNWYEDNNY331KALFGGNNTE341EDVDTFYDNS
351-400351TTPYCNDLMK361NLESSPLSRI371IWKALKPLLV381GKILYTPDTP391ATRQVMAEVN
401-450401KTFQELAVFH411DLEGMWEELS421PQIWTFMENS431QEMDLVRTLL441DSRGNDQFWE
451-500451QKLDGLDWTA461QDIMAFLAKN471PEDVQSPNGS481VYTWREAFNE491TNQAIQTISR
501-550501FMECVNLNKL511EPIPTEVRLI521NKSMELLDER531KFWAGIVFTG541ITPDSVELPH
551-600551HVKYKIRMDI561DNVERTNKIK571DGYWDPGPRA581DPFEDMRYVW591GGFAYLQDVV
601-650601EQAIIRVLTG611SEKKTGVYVQ621QMPYPCYVDD631IFLRVMSRSM641PLFMTLAWIY
651-700651SVAVIIKSIV661YEKEARLKET671MRIMGLDNGI681LWFSWFVSSL691IPLLVSAGLL
701-750701VVILKLGNLL711PYSDPSVVFV721FLSVFAMVTI731LQCFLISTLF741SRANLAAACG
751-800751GIIYFTLYLP761YVLCVAWQDY771VGFSIKIFAS781LLSPVAFGFG791CEYFALFEEQ
801-850801GIGVQWDNLF811ESPVEEDGFN821LTTAVSMMLF831DTFLYGVMTW841YIEAVFPGQY
851-900851GIPRPWYFPC861TKSYWFGEEI871DEKSHPGSSQ881KGVSEICMEE891EPTHLRLGVS
901-950901IQNLVKVYRD911GMKVAVDGLA921LNFYEGQITS931FLGHNGAGKT941TTMSILTGLF
951-1000951PPTSGTAYIL961GKDIRSEMSS971IRQNLGVCPQ981HNVLFDMLTV991EEHIWFYARL
1001-10501001KGLSEKHVKA1011EMEQMALDVG1021LPPSKLKSKT1031SQLSGGMQRK1041LSVALAFVGG
1051-11001051SKVVILDEPT1061AGVDPYSRRG1071IWELLLKYRQ1081GRTIILSTHH1091MDEADILGDR
1101-11501101IAIISHGKLC1111CVGSSLFLKN1121QLGTGYYLTL1131VKKDVESSLS1141SCRNSSSTVS
1151-12001151CLKKEDSVSQ1161SSSDAGLGSD1171HESDTLTIDV1181SAISNLIRKH1191VSEARLVEDI
1201-12501201GHELTYVLPY1211EAAKEGAFVE1221LFHEIDDRLS1231DLGISSYGIS1241ETTLEEIFLK
1251-13001251VAEESGVDAE1261TSDGTLPARR1271NRRAFGDKQS1281CLHPFTEDDA1291VDPNDSDIDP
1301-13501301ESRETDLLSG1311MDGKGSYQLK1321GWKLTQQQFV1331ALLWKRLLIA1341RRSRKGFFAQ
1351-14001351IVLPAVFVCI1361ALVFSLIVPP1371FGKYPSLELQ1381PWMYNEQYTF1391VSNDAPEDMG
1401-14501401TQELLNALTK1411DPGFGTRCME1421GNPIPDTPCL1431AGEEDWTISP1441VPQSIVDLFQ
1451-15001451NGNWTMKNPS1461PACQCSSDKI1471KKMLPVCPPG1481AGGLPPPQRK1491QKTADILQNL
1501-15501501TGRNISDYLV1511KTYVQIIAKS1521LKNKIWVNEF1531RYGGFSLGVS1541NSQALPPSHE
1551-16001551VNDAIKQMKK1561LLKLTKDSSA1571DRFLSSLGRF1581MAGLDTKNNV1591KVWFNNKGWH
1601-16501601AISSFLNVIN1611NAILRANLQK1621GENPSQYGIT1631AFNHPLNLTK1641QQLSEVALMT
1651-17001651TSVDVLVSIC1661VIFAMSFVPA1671SFVVFLIQER1681VSKAKHLQFI1691SGVKPVIYWL
1701-17501701SNFVWDMCNY1711VVPATLVIII1721FICFQQKSYV1731SSTNLPVLAL1741LLLLYGWSIT
1751-18001751PLMYPASFVF1761KIPSTAYVVL1771TSVNLFIGIN1781GSVATFVLEL1791FTNNKLNDIN
1801-18501801DILKSVFLIF1811PHFCLGRGLI1821DMVKNQAMAD1831ALERFGENRF1841VSPLSWDLVG
1851-19001851RNLFAMAVEG1861VVFFLITVLI1871QYRFFIRPRP1881VKAKLPPLND1891EDEDVRRERQ
1901-19501901RILDGGGQND1911ILEIKELTKI1921YRRKRKPAVD1931RICIGIPPGE1941CFGLLGVNGA
1951-20001951GKSTTFKMLT1961GDTPVTRGDA1971FLNKNSILSN1981IHEVHQNMGY1991CPQFDAITEL
2001-20502001LTGREHVEFF2011ALLRGVPEKE2021VGKVGEWAIR2031KLGLVKYGEK2041YASNYSGGNK
2051-21002051RKLSTAMALI2061GGPPVVFLDE2071PTTGMDPKAR2081RFLWNCALSI2091VKEGRSVVLT
2101-21502101SHSMEECEAL2111CTRMAIMVNG2121RFRCLGSVQH2131LKNRFGDGYT2141IVVRIAGSNP
2151-22002151DLKPVQEFFG2161LAFPGSVLKE2171KHRNMLQYQL2181PSSLSSLARI2191FSILSQSKKR
2201-22502201LHIEDYSVSQ2211TTLDQVFVNF2221AKDQSDDDHL2231KDLSLHKNQT2241VVDVAVLTSF
2251-22612251LQDEKVKESY2261V
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 3 | - | - | - |
GPS-Palm: 0.98
Deep-Palm: 0.04
|
|
| 23 | - | - | - |
GPS-Palm: 0.86
Deep-Palm: 0.94
|
|
| 54 | - | - | - |
Deep-Palm: 0.22
|
|
| 75 | - | - | - |
Deep-Palm: 0.56
|
|
| 81 | - | - | - |
Deep-Palm: 0.21
|
|
| 195 | - | - | - |
GPS-Palm: 0.66
Deep-Palm: 0.95
|
|
| 215 | - | - | - |
GPS-Palm: 0.96
Deep-Palm: 0.98
|
|
| 309 | - |
brain
(39008777)
| - |
Deep-Palm: 0.95
|
|
| 355 | - | - | - |
Deep-Palm: 0.17
|
|
| 504 | - | - | - |
GPS-Palm: 0.85
Deep-Palm: 0.74
|
|
| 626 | - | - | - |
Deep-Palm: 0.15
|
|
| 733 | - | - | - |
GPS-Palm: 0.83
Deep-Palm: 0.80
|
|
| 749 | - | - | - |
GPS-Palm: 0.81
Deep-Palm: 0.90
|
|
| 764 | - | - | - |
Deep-Palm: 0.26
|
|
| 791 | - | - | - |
Deep-Palm: 0.93
|
|
| 860 | - | - | - |
Deep-Palm: 0.17
|
|
| 887 | - | - | - |
Deep-Palm: 0.71
|
|
| 978 | - | - | - |
Deep-Palm: 0.51
|
|
| 1110 | - | - | - |
GPS-Palm: 0.96
Deep-Palm: 0.97
|
|
| 1111 | - | - | - |
GPS-Palm: 0.96
Deep-Palm: 0.97
|
|
| 1142 | - | - | - |
Deep-Palm: 0.96
|
|
| 1151 | - | - | - |
Deep-Palm: 0.90
|
|
| 1281 | SWISSPALM DBPTM CYSMODDB | - |
Forebrain
(28680068)
| - |
Deep-Palm: 0.82
|
| 1359 | - | - | - |
Deep-Palm: 0.85
|
|
| 1418 | - | - | - |
Deep-Palm: 0.92
|
|
| 1429 | - | - | - |
Deep-Palm: 0.43
|
|
| 1463 | - | - | - |
GPS-Palm: 0.71
Deep-Palm: 0.09
|
|
| 1465 | - | - | - |
GPS-Palm: 0.74
Deep-Palm: 0.07
|
|
| 1477 | - | - | - |
GPS-Palm: 0.85
Deep-Palm: 0.86
|
|
| 1660 | - | - | - |
Deep-Palm: 0.26
|
|
| 1708 | - | - | - |
Deep-Palm: 0.05
|
|
| 1723 | - | - | - |
GPS-Palm: 0.89
Deep-Palm: 0.37
|
|
| 1814 | - | - | - |
GPS-Palm: 0.92
Deep-Palm: 0.86
|
|
| 1933 | - | - | - |
GPS-Palm: 0.76
Deep-Palm: 0.95
|
|
| 1941 | - | - | - |
GPS-Palm: 0.70
Deep-Palm: 0.96
|
|
| 1991 | - | - | - |
Deep-Palm: 0.10
|
|
| 2086 | - | - | - |
GPS-Palm: 0.96
Deep-Palm: 0.94
|
|
| 2107 | - | - | - |
Deep-Palm: 0.93
|
|
| 2111 | - | - | - |
Deep-Palm: 0.83
|
|
| 2124 | - | - | - |
GPS-Palm: 0.91
Deep-Palm: 0.96
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.600
3
Liver
Specificity: 0.600
3/3 (100.0%)
2
Testis
Specificity: 0.400
2/2 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.