Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| P47708 | Rph3a | Rabphilin-3A (Exophilin-1) | Mus musculus (Mouse) | 681 aa |
Protein Details: P47708 (Rph3a)
Protein Information
| Accession | P47708 |
|---|---|
| Protein Names | Rabphilin-3A (Exophilin-1) |
| Gene Symbol | Rph3a |
| Organism | Mus musculus (Mouse) |
| Length | 681 aa |
| Isoforms | No isoforms |
| Related PMIDs | 29733200 31311849 34200797 35358180 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MTDTVVNRWM11YPGDGPLQSN21DKEQLQAGWS31VHPGAQTDRQ41RKQEELTDEE
51-10051KEIINRVIAR61AEKMEAMEQE71RIGRLVDRLE81TMRKNVAGDG91VNRCILCGEQ
101-150101LGMLGSACVV111CEDCKKNVCT121KCGVETSNNR131PHPVWLCKIC141LEQREVWKRS
151-200151GAWFFKGFPK161QVLPQPMPIK171KTKPQQPAGE181PATQEQPTPE191SRHPARAPAR
201-250201GDMEDRRPPG211QKPGPDLTSA221PGRGSHGPPT231RRASEARMST241AARDSEGWDH
251-300251AHGGGTGDTS261RSPAGLRRAN271SVQAARPAPA281PVPSPAPPQP291VQPGPPGGSR
301-350301ATPGPGRFPE311QSTEAPPSDP321GYPGAVAPAR331EERTGPAGGF341QAAPHTAAPY
351-400351SQAAPARQPP361PAEEEEEEAN371SYDSDEATTL381GALEFSLLYD391QDNSNLQCTI
401-450401IRAKGLKPMD411SNGLADPYVK421LHLLPGASKS431NKLRTKTLRN441TRNPVWNETL
451-500451QYHGITEEDM461QRKTLRISVC471DEDKFGHNEF481IGETRFSLKK491LKANQRKNFN
501-550501ICLERVIPMK511RAGTTGSARG521MALYEEEQVE531RIGDIEERGK541ILVSLMYSTQ
551-600551QGGLIVGIIR561CVHLAAMDAN571GYSDPFVKLW581LKPDMGKKAK591HKTQIKKKTL
601-650601NPEFNEEFFY611DIKHSDLAKK621SLDISVWDYD631IGKSNDYIGG641CQLGISAKGE
651-681651RLKHWYECLK661NKDKKIERWH671QLQNENHVSS681D
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 94 | - | - | - |
Deep-Palm: 0.85
|
|
| 97 | - | - | - |
Deep-Palm: 0.48
|
|
| 108 | - | - | - |
GPS-Palm: 0.76
Deep-Palm: 0.13
|
|
| 111 | - | - | - |
GPS-Palm: 0.70
Deep-Palm: 0.30
|
|
| 114 | - | - | - |
Deep-Palm: 0.09
|
|
| 119 | - | - | - |
Deep-Palm: 0.06
|
|
| 122 | - | - | - |
Deep-Palm: 0.04
|
|
| 137 | SWISSPALM DBPTM CYSMODDB | FYVE-type zinc finger |
Forebrain
(28680068)
|
Brain
(35358180)
Brain
(31311849)
|
Deep-Palm: 0.49
|
| 140 | FYVE-type zinc finger |
Brain
(31311849)
| - |
GPS-Palm: 0.79
Deep-Palm: 0.42
|
|
| 398 | - | - | - |
GPS-Palm: 0.69
Deep-Palm: 0.41
|
|
| 470 | C2 domain |
Brain
(31311849)
|
Brain
(35358180)
Brain
(31311849)
|
GPS-Palm: 0.75
Deep-Palm: 0.17
|
|
| 502 | - |
Brain
(31311849)
brain
(39008777)
|
Brain
(35358180)
Brain
(31311849)
|
GPS-Palm: 0.91
Deep-Palm: 0.95
|
|
| 561 | - | - |
Brain
(35358180)
|
GPS-Palm: 0.71
Deep-Palm: 0.06
|
|
| 641 | C2 domain |
Brain
(31311849)
|
Brain
(35358180)
Brain
(31311849)
|
GPS-Palm: 0.86
Deep-Palm: 0.24
|
|
| 658 | - |
Brain
(31311849)
|
Brain
(35358180)
|
GPS-Palm: 0.87
Deep-Palm: 0.94
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
5
Brain
Specificity: 0.135
5/5 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
32
Brain tissue (Mass)
Specificity: 0.865
32/56 (57.1%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.