Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| P48377 | Rfx1 | MHC class II regulatory factor … | Mus musculus (Mouse) | 963 aa |
Protein Details: P48377 (Rfx1)
Protein Information
| Accession | P48377 |
|---|---|
| Protein Names | MHC class II regulatory factor RFX1 (Regulatory factor X 1) (Transcription factor RFX1) |
| Gene Symbol | Rfx1 |
| Organism | Mus musculus (Mouse) |
| Length | 963 aa |
| Isoforms | No isoforms |
| Related PMIDs | 35477839 |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MATQSYVTEL11QAAPQASQPP21QAPPQALPQP31PPPAAPQPPA41AATPQPQYVT
51-10051ELQSPQPQTQ61PPGSQKQYVA71ELPAAPAPSQ81PATPAPSPVA91QQYIVVTVSE
101-150101GAMRASETVS111EASPSSTASQ121TGVPTQVVQQ131VQGTQQRLLV141QASVQAKPGH
151-200151VSPLQLTNIQ161VPQQAIPTQH171LVVQSPAPGT181KSGQVSLTVH191SAQQVHSAPE
201-250201RSPVQANNST211SKTAGTPAAT221VQQLQVHSVQ231QSVPVTQERS241VVQATPQTKA
251-300251GPVQQLTVQG261LQPVHVAQEV271QQLPQVPVPH281VYSSQVQYVE291GGDASYTASA
301-350301IRSSTYQYPE311TPIYTQTAGT321SYYEASGTAA331QVSTPATSQT341VASSGSVPMY
351-400351VSGSPIVASS361SSSEAGASNS371SVGAGGNGGG381GSSGGGSGGS391SGSGAGTYVI
401-450401QGGYMLGNAS411QSYSHTTRAS421PATVQWLLDN431YETAEGVSLP441RSTLYCHYLL
451-500451HCQEQKLEPV461NAASFGKLIR471SVFMGLRTRR481LGTRGNSKYH491YYGLRIKASS
501-550501PLLRLMEDQQ511HMAMRGQPFS521QKQRLKPIQK531MEGVANGVAV541GQQSTGLSDI
551-600551SAQVQQYQQF561LDASRSLPDF571AELDLQGKVL581PEGVGPGDIK591AFQVLYREHC
601-650601EAIVDVMVNL611QFTLVETLWK621TFWRYNLSQP631SEAPPLAVHD641EAEKRLPRAS
651-700651LVLLSKFQPV661LQWTKHCDNV671LYQGLVEILI681PDVLRPIPSA691LTQAIRNFAK
701-750701SLESWLTHAM711VNIPEEMLRV721KVAAAGAFAQ731TLRRYTSLNH741LAQAARAVLQ
751-800751NTAQINQMLS761DLNRVDFANV771QEQASWVCRC781EDRVVQRLEQ791DFKVTLQQQN
801-850801SLEQWAAWLD811GVVSQVLKPY821QGSSGFPKAA831KLFLLKWSFY841SSMVIRDLTL
851-900851RSAASFGSFH861LIRLLYDEYM871YYLIEHRVAQ881AKGETPIAVM891GEFANLATSL
901-950901NPLDPDKDEE911EEEEEESEDE921LPQDISLAAG931SESPALGPEA941LEPPAKLART
951-963951DTRGLFVQAL961PSS
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 446 | - | - | - |
Deep-Palm: 0.41
|
|
| 452 | - | - | - |
Deep-Palm: 0.25
|
|
| 600 | - | - | - |
Deep-Palm: 0.57
|
|
| 667 | - | - | - |
Deep-Palm: 0.69
|
|
| 778 | SWISSPALM DBPTM CYSMODDB | RFX BCD domain |
Forebrain
(28680068)
| - |
Deep-Palm: 0.63
|
| 780 | - | - | - |
Deep-Palm: 0.69
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
2
Testis
Specificity: 1.000
2/2 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.