Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| P48444 | ARCN1 | Coatomer subunit delta (Archain) (Delta-coat … | Homo sapiens (Human) | 511 aa |
Protein Details: P48444 (ARCN1)
Protein Information
| Accession | P48444 |
|---|---|
| Protein Names | Coatomer subunit delta (Archain) (Delta-coat protein) (Delta-COP) |
| Gene Symbol | ARCN1 |
| Organism | Homo sapiens (Human) |
| Length | 511 aa |
| Isoforms | No isoforms |
| Related PMIDs | 22496122 29733200 |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MVLLAAAVCT11KAGKAIVSRQ21FVEMTRTRIE31GLLAAFPKLM41NTGKQHTFVE
51-10051TESVRYVYQP61MEKLYMVLIT71TKNSNILEDL81ETLRLFSRVI91PEYCRALEEN
101-150101EISEHCFDLI111FAFDEIVALG121YRENVNLAQI131RTFTEMDSHE141EKVFRAVRET
151-200151QEREAKAEMR161RKAKELQQAR171RDAERQGKKA181PGFGGFGSSA191VSGGSTAAMI
201-250201TETIIETDKP211KVAPAPARPS221GPSKALKLGA231KGKEVDNFVD241KLKSEGETIM
251-300251SSSMGKRTSE261ATKMHAPPIN271MESVHMKIEE281KITLTCGRDG291GLQNMELHGM
301-350301IMLRISDDKY311GRIRLHVENE321DKKGVQLQTH331PNVDKKLFTA341ESLIGLKNPE
351-400351KSFPVNSDVG361VLKWRLQTTE371ESFIPLTINC381WPSESGNGCD391VNIEYELQED
401-450401NLELNDVVIT411IPLPSGVGAP421VIGEIDGEYR431HDSRRNTLEW441CLPVIDAKNK
451-500451SGSLEFSIAG461QPNDFFPVQV471SFVSKKNYCN481IQVTKVTQVD491GNSPVRFSTE
501-511501TTFLVDKYEI511L
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 9 | SWISSPALM DBPTM CYSMODDB | Coatomer delta subunit | - | - |
GPS-Palm: 0.96
Deep-Palm: 0.31
|
| 94 | - | - | - |
GPS-Palm: 0.80
Deep-Palm: 0.96
|
|
| 106 | - | - | - |
Deep-Palm: 0.24
|
|
| 286 | - | - | - |
GPS-Palm: 0.90
Deep-Palm: 0.72
|
|
| 380 | - | - | - |
Deep-Palm: 0.08
|
|
| 389 | - | - | - |
Deep-Palm: 0.09
|
|
| 441 | - | - |
Unknown
(32651440)
|
GPS-Palm: 0.70
Deep-Palm: 0.94
|
|
| 479 | - | - | - |
Deep-Palm: 0.12
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.500
2
HAP1 cell
Specificity: 0.500
2/2 (100.0%)
1
EC cell
Specificity: 0.250
1/1 (100.0%)
1
293T cell
Specificity: 0.250
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.
Conservation score for cysteine
PhyloP for Cysteine
PhastCons Conservation Scores for Cysteine
TCGA Cysteine Mutation Information
Note: Mutations indicate amino acid changes that may create potential palmitoylation sites.
| Position | Amino Acid Change | Frequency | Type | Function | Cancer Type |
|---|---|---|---|---|---|
| 153 | R → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 160 | R → C | 0.005618 | SNP | Missense Mutation | PAAD |
| 161 | R → C | 0.002294 | SNP | Missense Mutation | OV |
| 314 | R → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 381 | W → C | 0.002020 | SNP | Missense Mutation | PRAD |