Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| P49698 | Hnf4a | Hepatocyte nuclear factor 4-alpha (HNF-4-alpha) … | Mus musculus (Mouse) | 474 aa |
Protein Details: P49698 (Hnf4a)
Protein Information
| Accession | P49698 |
|---|---|
| Protein Names | Hepatocyte nuclear factor 4-alpha (HNF-4-alpha) (Nuclear receptor subfamily 2 group A member 1) (Transcription factor 14) (TCF-14) (Transcription factor HNF-4) |
| Gene Symbol | Hnf4a |
| Organism | Mus musculus (Mouse) |
| Length | 474 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 34884899 37925639 |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MRLSKTLAGM11DMADYSAALD21PAYTTLEFEN31VQVLTMGNDT41SPSEGANLNS
51-10051SNSLGVSALC61AICGDRATGK71HYGASSCDGC81KGFFRRSVRK91NHMYSCRFSR
101-150101QCVVDKDKRN111QCRYCRLKKC121FRAGMKKEAV131QNERDRISTR141RSSYEDSSLP
151-200151SINALLQAEV161LSQQITSPIS171GINGDIRAKK181IANITDVCES191MKEQLLVLVE
201-250201WAKYIPAFCE211LLLDDQVALL221RAHAGEHLLL231GATKRSMVFK241DVLLLGNDYI
251-300251VPRHCPELAE261MSRVSIRILD271ELVLPFQELQ281IDDNEYACLK291AIIFFDPDAK
301-350301GLSDPGKIKR311LRSQVQVSLE321DYINDRQYDS331RGRFGELLLL341LPTLQSITWQ
351-400351MIEQIQFIKL361FGMAKIDNLL371QEMLLGGSAS381DAPHTHHPLH391PHLMQEHMGT
401-450401NVIVANTMPS411HLSNGQMCEW421PRPRGQAATP431ETPQPSPPSG441SGSESYKLLP
451-474451GAITTIVKPP461SAIPQPTITK471QEAI
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 60 | - | - | - |
GPS-Palm: 0.81
Deep-Palm: 0.84
|
|
| 63 | - | - | - |
GPS-Palm: 0.86
Deep-Palm: 0.78
|
|
| 77 | - | - | - |
GPS-Palm: 0.83
Deep-Palm: 0.36
|
|
| 80 | - | - | - |
GPS-Palm: 0.82
Deep-Palm: 0.21
|
|
| 96 | - | - | - |
GPS-Palm: 0.76
Deep-Palm: 0.13
|
|
| 102 | - | - | - |
Deep-Palm: 0.05
|
|
| 112 | - | - | - |
GPS-Palm: 0.72
Deep-Palm: 0.19
|
|
| 115 | - | - | - |
GPS-Palm: 0.86
Deep-Palm: 0.50
|
|
| 120 | - | - | - |
GPS-Palm: 0.76
Deep-Palm: 0.49
|
|
| 188 | SWISSPALM DBPTM CYSMODDB | Ligand-binding domain of nuclear hormone receptor |
Liver
(28526873)
| - |
GPS-Palm: 0.91
Deep-Palm: 0.95
|
| 209 | - | - | - |
Deep-Palm: 0.93
|
|
| 255 | - | - | - |
Deep-Palm: 0.96
|
|
| 288 | - | - | - |
GPS-Palm: 0.69
Deep-Palm: 0.92
|
|
| 418 | - | - | - |
Deep-Palm: 0.34
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
5
Liver
Specificity: 1.000
5/5 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.