Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| P50396 | Gdi1 | Rab GDP dissociation inhibitor alpha … | Mus musculus (Mouse) | 447 aa |
Protein Details: P50396 (Gdi1)
Protein Information
| Accession | P50396 |
|---|---|
| Protein Names | Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine diphosphate dissociation inhibitor 1) (GDI-1) |
| Gene Symbol | Gdi1 |
| Organism | Mus musculus (Mouse) |
| Length | 447 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 29733200 31311849 34200797 35358180 35477839 37925639 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MDEEYDVIVL11GTGLTECILS21GIMSVNGKKV31LHMDRNPYYG41GESSSITPLE
51-10051ELYKRFQILE61GPPESMGRGR71DWNVDLIPKF81LMANGQLVKM91LLYTEVTRYL
101-150101DFKVVEGSFV111YKGGKIYKVP121STETEALASN131LMGMFEKRRF141RKFLVFVANF
151-200151DENDPKTFEG161VDPQNTSMRD171VYRKFDLGQD181VIDFTGHALA191LYRTDDYLDQ
201-250201PCLETINRIK211LYSESLARYG221KSPYLYPLYG231LGELPQGFAR241LSAIYGGTYM
251-300251LNKPVDDIIM261ENGKVVGVKS271EGEVARCKQL281ICDPSYIPDR291VQKAGQVIRI
301-350301ICILSHPIKN311TNDANSCQII321IPQNQVNRKS331DIYVCMISYA341HNVAAQGKYI
351-400351AIASTTVETA361EPEKEVEPAL371ELLEPIDQKF381VAISDLYEPI391DDGSESQVFC
401-447401SCSYDATTHF411ETTCNDIKDI421YKRMAGSAFD431FENMKRKQND441VFGEADQ
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 17 | FAD/NAD(P)-binding domain superfamily GDP dissociation inhibitor | - |
Brain
(35358180)
|
GPS-Palm: 0.76
Deep-Palm: 0.96
|
|
| 202 | GDP dissociation inhibitor |
Brain
(34200797)
|
Brain
(35358180)
|
GPS-Palm: 0.74
Deep-Palm: 0.94
|
|
| 277 | - | - | - |
Deep-Palm: 0.96
|
|
| 282 | - | - |
Brain
(35358180)
|
GPS-Palm: 0.81
Deep-Palm: 0.97
|
|
| 302 | GDP dissociation inhibitor |
Brain
(31311849)
|
Brain
(35358180)
Brain
(31311849)
|
GPS-Palm: 0.94
Deep-Palm: 0.43
|
|
| 317 | SWISSPALM DBPTM CYSMODDB | GDP dissociation inhibitor |
Liver
(28526873)
|
Brain
(35358180)
|
GPS-Palm: 0.84
Deep-Palm: 0.17
|
| 335 | - | - |
Brain
(35358180)
|
Deep-Palm: 0.10
|
|
| 400 | - | - |
Brain
(35358180)
|
Deep-Palm: 0.03
|
|
| 402 | - | - |
Brain
(35358180)
|
Deep-Palm: 0.02
|
|
| 414 | - | - |
Brain
(35358180)
|
Deep-Palm: 0.05
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.455
5
Brain
Specificity: 0.125
5/5 (100.0%)
4
Liver
Specificity: 0.100
4/4 (100.0%)
2
Testis
Specificity: 0.050
2/2 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.931
27
Brain tissue (Mass)
Specificity: 0.675
27/56 (48.2%)
2
Liver tissue (Mass)
Specificity: 0.050
2/8 (25.0%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.