Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| P51150 | Rab7a | Ras-related protein Rab-7a (EC 3.6.5.2) | Mus musculus (Mouse) | 207 aa |
Protein Details: P51150 (Rab7a)
Protein Information
| Accession | P51150 |
|---|---|
| Protein Names | Ras-related protein Rab-7a (EC 3.6.5.2) |
| Gene Symbol | Rab7a |
| Organism | Mus musculus (Mouse) |
| Length | 207 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 29733200 34200797 34884899 35358180 37925639 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MTSRKKVLLK11VIILGDSGVG21KTSLMNQYVN31KKFSNQYKAT41IGADFLTKEV
51-10051MVDDRLVTMQ61IWDTAGQERF71QSLGVAFYRG81ADCCVLVFDV91TAPNTFKTLD
101-150101SWRDEFLIQA111SPRDPENFPF121VVLGNKIDLE131NRQVATKRAQ141AWCYSKNNIP
151-200151YFETSAKEAI161NVEQAFQTIA171RNALKQETEV181ELYNEFPEPI191KLDKNDRAKA
201-207201SAESCSC
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 83 | SWISSPALM DBPTM CYSMODDB | Ras family |
Forebrain
(28680068)
|
Brain
(35358180)
|
GPS-Palm: 0.82
Deep-Palm: 0.83
|
| 84 | - | - |
Brain
(35358180)
|
GPS-Palm: 0.73
Deep-Palm: 0.83
|
|
| 143 | SWISSPALM DBPTM CYSMODDB | Ras family |
Liver
(28526873)
|
Brain
(35358180)
|
GPS-Palm: 0.74
Deep-Palm: 0.92
|
| 205 | - | - | - |
GPS-Palm: 0.97
Deep-Palm: 0.04
|
|
| 207 | - | - | - |
GPS-Palm: 0.97
Deep-Palm: 0.03
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.625
5
Liver
Specificity: 0.192
5/5 (100.0%)
3
Brain
Specificity: 0.115
3/3 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
18
Brain tissue (Mass)
Specificity: 0.692
18/56 (32.1%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.