Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| P51178-2 | PLCD1 | 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-1 (EC … | Homo sapiens (Human) | 777 aa |
Protein Details: P51178-2 (PLCD1)
Protein Information
| Accession | P51178-2 |
|---|---|
| Protein Names | 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-1 (EC 3.1.4.11) (Phosphoinositide phospholipase C-delta-1) (Phospholipase C-III) (PLC-III) (Phospholipase C-delta-1) (PLC-delta-1) |
| Gene Symbol | PLCD1 |
| Organism | Homo sapiens (Human) |
| Length | 777 aa |
| Isoforms | |
| Related PMIDs | 26876311 32944167 36430497 |
| Database Sources | No database sources |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MQCLGIRSRS11RSRELYLQER21SLKVAALNGR31RLGLQDDEDL41QALLKGSQLL
51-10051KVKSSSWRRE61RFYKLQEDCK71TIWQESRKVM81RTPESQLFSI91EDIQEVRMGH
101-150101RTEGLEKFAR111DVPEDRCFSI121VFKDQRNTLD131LIAPSPADAQ141HWVLGLHKII
151-200151HHSGSMDQRQ161KLQHWIHSCL171RKADKNKDNK181MSFKELQNFL191KELNIQVDDS
201-250201YARKIFRECD211HSQTDSLEDE221EIEAFYKMLT231QRVEIDRTFA241EAAGSGETLS
251-300251VDQLVTFLQH261QQREEAAGPA271LALSLIERYE281PSETAKAQRQ291MTKDGFLMYL
301-350301LSADGSAFSL311AHRRVYQDMG321QPLSHYLVSS331SHNTYLLEDQ341LAGPSSTEAY
351-400351IRALCKGCRC361LELDCWDGPN371QEPIIYHGYT381FTSKILFCDV391LRAIRDYAFK
401-450401ASPYPVILSL411ENHCTLEQQR421VMARHLHAIL431GPMLLNRPLD441GVTNSLPSPE
451-500451QLKGKILLKG461KKLGGLLPPG471GEGGPEATVV481SDEDEAAEME491DEAVRSRVQH
501-550501KPKEDKLRLA511QELSDMVIYC521KSVHFGGFSS531PGTPGQAFYE541MASFSENRAL
551-600551RLLQESGNGF561VRHNVGHLSR571IYPAGWRTDS581SNYSPVEMWN591GGCQIVALNF
601-650601QTPGPEMDVY611QGRFQDNGAC621GYVLKPAFLR631DPNGTFNPRA641LAQGPWWARK
651-700651RLNIRVISGQ661QLPKVNKNKN671SIVDPKVTVE681IHGVSRDVAS691RQTAVITNNG
701-750701FNPWWDTEFA711FEVVVPDLAL721IRFLVEDYDA731SSKNDFIGQS741TIPLNSLKQG
751-777751YRHVHLMSKN761GDQHPSATLF771VKISLQD
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 3 | - | - | - |
GPS-Palm: 0.98
|
|
| 48 | - | - | - |
Deep-Palm: 0.81
|
|
| 96 | - | - | - |
Deep-Palm: 0.93
|
|
| 148 | - | - | - |
Deep-Palm: 0.44
|
|
| 188 | - | - | - |
Deep-Palm: 0.36
|
|
| 334 | - | - | - |
Deep-Palm: 0.79
|
|
| 337 | - | - | - |
Deep-Palm: 0.60
|
|
| 339 | - | - | - |
Deep-Palm: 0.36
|
|
| 344 | - | - | - |
Deep-Palm: 0.12
|
|
| 367 | - | - | - |
Deep-Palm: 0.53
|
|
| 388 | - | - | - |
GPS-Palm: 0.92
|
|
| 393 | - | - | - |
Deep-Palm: 0.28
|
|
| 499 | - | - | - |
Deep-Palm: 0.96
|
|
| 572 | - | - | - |
Deep-Palm: 0.12
|
|
| 599 | - | - | - |
Deep-Palm: 0.83
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.500
3
PC3
Specificity: 0.500
3/3 (100.0%)
2
cerebral cortex
Specificity: 0.333
2/2 (100.0%)
1
frontal cortex
Specificity: 0.167
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.
Conservation score for cysteine
PhyloP for Cysteine
PhastCons Conservation Scores for Cysteine
TCGA Cysteine Mutation Information
Note: Mutations indicate amino acid changes that may create potential palmitoylation sites.
| Position | Amino Acid Change | Frequency | Type | Function | Cancer Type |
|---|---|---|---|---|---|
| 40 | R → C | 0.001014 | SNP | Missense Mutation | BRCA |
| 257 | R → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 284 | G → C | 0.001014 | SNP | Missense Mutation | BRCA |
| 527 | R → C | 0.002020 | SNP | Missense Mutation | PRAD |
| 527 | R → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 571 | G → C | 0.002976 | SNP | Missense Mutation | KIRC |
| 717 | G → C | 0.002141 | SNP | Missense Mutation | SKCM |
| 737 | S → C | 0.001969 | SNP | Missense Mutation | HNSC |