Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| P51655 | Gpc4 | Glypican-4 (K-glypican) [Cleaved into: Secreted … | Mus musculus (Mouse) | 557 aa |
Protein Details: P51655 (Gpc4)
Protein Information
| Accession | P51655 |
|---|---|
| Protein Names | Glypican-4 (K-glypican) [Cleaved into: Secreted glypican-4] |
| Gene Symbol | Gpc4 |
| Organism | Mus musculus (Mouse) |
| Length | 557 aa |
| Isoforms | No isoforms |
| Related PMIDs | 35477839 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MARLGLLALL11CTLAALSASL21LAAELKSKSC31SEVRRLYVSK41GFNKNDAPLY
51-10051EINGDHLKIC61PQDYTCCSQE71MEEKYSLQSK81DDFKTVVSEQ91CNHLQAIFAS
101-150101RYKKFDEFFK111ELLENAEKSL121NDMFVKTYGH131LYMQNSELFK141DLFVELKRYY
151-200151VAGNVNLEEM161LNDFWARLLE171RMFRLVNSQY181HFTDEYLECV191SKYTEQLKPF
201-250201GDVPRKLKLQ211VTRAFVAART221FAQGLAVARD231VVSKVSVVNP241TAQCTHALLK
251-300251MIYCSHCRGL261VTVKPCYNYC271SNIMRGCLAN281QGDLDFEWNN291FIDAMLMVAE
301-350301RLEGPFNIES311VMDPIDVKIS321DAIMNMQDNS331VQVSQKVFQG341CGPPKPLPAG
351-400351RISRSISESA361FSARFRPYHP371EQRPTTAAGT381SLDRLVTDVK391EKLKQAKKFW
401-450401SSLPSTVCND411ERMAAGNENE421DDCWNGKGKS431RYLFAVTGNG441LANQGNNPEV
451-500451QVDTSKPDIL461ILRQIMALRV471MTSKMKNAYN481GNDVDFFDIS491DESSGEGSGS
501-550501GCEYQQCPSE511FEYNATDHSG521KSANEKADSA531GGAHAEAKPY541LLAALCILFL
551-557551AVQGEWR
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 11 | - | - | - |
GPS-Palm: 0.84
Deep-Palm: 0.97
|
|
| 30 | Glypican | - | - |
GPS-Palm: 0.88
Deep-Palm: 0.98
|
|
| 60 | - | - |
Brain
(35358180)
|
Deep-Palm: 0.11
|
|
| 66 | - | - |
Brain
(35358180)
|
Deep-Palm: 0.11
|
|
| 67 | - | - |
Brain
(35358180)
|
Deep-Palm: 0.09
|
|
| 91 | - | - | - |
Deep-Palm: 0.67
|
|
| 189 | - | - |
Brain
(35358180)
|
Deep-Palm: 0.67
|
|
| 244 | - | - |
Brain
(35358180)
|
Deep-Palm: 0.33
|
|
| 254 | - | - |
Brain
(35358180)
|
GPS-Palm: 0.68
Deep-Palm: 0.09
|
|
| 257 | - | - |
Brain
(35358180)
|
GPS-Palm: 0.83
Deep-Palm: 0.04
|
|
| 266 | - | - | - |
GPS-Palm: 0.76
Deep-Palm: 0.05
|
|
| 270 | - | - | - |
GPS-Palm: 0.73
Deep-Palm: 0.10
|
|
| 277 | - | - | - |
Deep-Palm: 0.04
|
|
| 341 | SWISSPALM DBPTM CYSMODDB | Glypican |
liver
(26165157)
|
Brain
(35358180)
|
GPS-Palm: 0.86
Deep-Palm: 0.89
|
| 408 | - | - | - |
Deep-Palm: 0.61
|
|
| 423 | - | - | - |
Deep-Palm: 0.28
|
|
| 502 | - | - | - |
Deep-Palm: 0.08
|
|
| 507 | - | - | - |
Deep-Palm: 0.08
|
|
| 546 | - | - | - |
GPS-Palm: 0.74
Deep-Palm: 0.76
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
2
Testis
Specificity: 0.100
2/2 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
18
Brain tissue (Mass)
Specificity: 0.900
18/56 (32.1%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.