Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| P51863 | Atp6v0d1 | V-type proton ATPase subunit d … | Mus musculus (Mouse) | 351 aa |
Protein Details: P51863 (Atp6v0d1)
Protein Information
| Accession | P51863 |
|---|---|
| Protein Names | V-type proton ATPase subunit d 1 (V-ATPase subunit d 1) (P39) (Physophilin) (V-ATPase 40 kDa accessory protein) (V-ATPase AC39 subunit) (Vacuolar proton pump subunit d 1) |
| Gene Symbol | Atp6v0d1 |
| Organism | Mus musculus (Mouse) |
| Length | 351 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 29733200 34200797 34884899 35358180 35477839 37925639 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MSFFPELYFN11VDNGYLEGLV21RGLKAGVLSQ31ADYLNLVQCE41TLEDLKLHLQ
51-10051STDYGNFLAN61EASPLTVSVI71DDKLKEKMVV81EFRHMRNHAY91EPLASFLDFI
101-150101TYSYMIDNVI111LLITGTLHQR121SIAELVPKCH131PLGSFEQMEA141VNIAQTPAEL
151-200151YNAILVDTPL161AAFFQDCISE171QDLDEMNIEI181IRNTLYKAYL191ESFYKFCTLL
201-250201GGTTADAMCP211ILEFEADRRA221FIITINSFGT231ELSKEDRAKL241FPHCGRLYPE
251-300251GLAQLARADD261YEQVKNVADY271YPEYKLLFEG281AGSNPGDKTL291EDRFFEHEVK
301-350301LNKLAFLNQF311HFGVFYAFVK321LKEQECRNIV331WIAECIAQRH341RAKIDNYIPI
351-351351F
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 39 | SWISSPALM DBPTM CYSMODDB | ATP synthase (C/AC39) subunit V-type ATP synthase c/d subunit, domain 3 superfamily ATPase, V0 complex, c/d subunit V-type ATP synthase subunit c/d subunit superfamily ATPase, V0 complex, subunit d |
Forebrain
(28680068)
|
Liver
(34884899)
Brain
(35358180)
|
Deep-Palm: 0.93
|
| 129 | - | - | - |
Deep-Palm: 0.81
|
|
| 167 | - | - | - |
Deep-Palm: 0.43
|
|
| 197 | SWISSPALM DBPTM CYSMODDB | ATP synthase (C/AC39) subunit |
Forebrain
(28680068)
|
Brain
(35358180)
|
GPS-Palm: 0.85
Deep-Palm: 0.93
|
| 209 | - | - |
Brain
(35358180)
|
Deep-Palm: 0.83
|
|
| 244 | ATP synthase (C/AC39) subunit |
Brain
(34200797)
| - |
GPS-Palm: 0.84
Deep-Palm: 0.98
|
|
| 326 | - | - | - |
Deep-Palm: 0.35
|
|
| 335 | SWISSPALM DBPTM CYSMODDB | ATP synthase (C/AC39) subunit |
Liver
(28526873)
|
Brain
(35358180)
|
GPS-Palm: 0.93
Deep-Palm: 0.45
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.500
6
Liver
Specificity: 0.150
6/6 (100.0%)
4
Brain
Specificity: 0.100
4/4 (100.0%)
2
Testis
Specificity: 0.050
2/2 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
28
Brain tissue (Mass)
Specificity: 0.700
28/56 (50.0%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.