Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| P53667 | LIMK1 | LIM domain kinase 1 (LIMK-1) … | Homo sapiens (Human) | 647 aa |
Protein Details: P53667 (LIMK1)
Protein Information
| Accession | P53667 |
|---|---|
| Protein Names | LIM domain kinase 1 (LIMK-1) (EC 2.7.11.1) |
| Gene Symbol | LIMK1 |
| Organism | Homo sapiens (Human) |
| Length | 647 aa |
| Isoforms | No isoforms |
| Related PMIDs | No related PMIDs |
| Database Sources | dbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MRLTLLCCTW11REERMGEEGS21ELPVCASCGQ31RIYDGQYLQA41LNADWHADCF
51-10051RCCDCSASLS61HQYYEKDGQL71FCKKDYWARY81GESCHGCSEQ91ITKGLVMVAG
101-150101ELKYHPECFI111CLTCGTFIGD121GDTYTLVEHS131KLYCGHCYYQ141TVVTPVIEQI
151-200151LPDSPGSHLP161HTVTLVSIPA171SSHGKRGLSV181SIDPPHGPPG191CGTEHSHTVR
201-250201VQGVDPGCMS211PDVKNSIHVG221DRILEINGTP231IRNVPLDEID241LLIQETSRLL
251-300251QLTLEHDPHD261TLGHGLGPET271SPLSSPAYTP281SGEAGSSARQ291KPVLRSCSID
301-350301RSPGAGSLGS311PASQRKDLGR321SESLRVVCRP331HRIFRPSDLI341HGEVLGKGCF
351-400351GQAIKVTHRE361TGEVMVMKEL371IRFDEETQRT381FLKEVKVMRC391LEHPNVLKFI
401-450401GVLYKDKRLN411FITEYIKGGT421LRGIIKSMDS431QYPWSQRVSF441AKDIASGMAY
451-500451LHSMNIIHRD461LNSHNCLVRE471NKNVVVADFG481LARLMVDEKT491QPEGLRSLKK
501-550501PDRKKRYTVV511GNPYWMAPEM521INGRSYDEKV531DVFSFGIVLC541EIIGRVNADP
551-600551DYLPRTMDFG561LNVRGFLDRY571CPPNCPPSFF581PITVRCCDLD591PEKRPSFVKL
601-647601EHWLETLRMH611LAGHLPLGPQ621LEQLDRGFWE631TYRRGESGLP641AHPEVPD
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 7 | DBPTM SWISSPALM | - | - | - |
GPS-Palm: 0.95
Deep-Palm: 0.03
|
| 8 | DBPTM SWISSPALM | - | - | - |
GPS-Palm: 0.96
Deep-Palm: 0.03
|
| 25 | Cysteine Rich Protein Zinc finger, LIM-type Glucocorticoid receptor-like (DNA-binding domain) | - | - |
GPS-Palm: 0.77
Deep-Palm: 0.69
|
|
| 28 | Zinc finger, LIM-type Cysteine Rich Protein Glucocorticoid receptor-like (DNA-binding domain) | - | - |
Deep-Palm: 0.87
|
|
| 49 | Zinc finger, LIM-type Cysteine Rich Protein LIM/homeobox transcription factors | - | - |
Deep-Palm: 0.08
|
|
| 52 | - | - | - |
Deep-Palm: 0.06
|
|
| 53 | - | - | - |
Deep-Palm: 0.07
|
|
| 55 | - | - | - |
Deep-Palm: 0.07
|
|
| 72 | - | - | - |
Deep-Palm: 0.05
|
|
| 84 | - | - | - |
Deep-Palm: 0.07
|
|
| 87 | - | - | - |
Deep-Palm: 0.14
|
|
| 108 | - | - | - |
Deep-Palm: 0.28
|
|
| 111 | - | - | - |
GPS-Palm: 0.68
Deep-Palm: 0.10
|
|
| 114 | - | - | - |
Deep-Palm: 0.09
|
|
| 134 | - | - | - |
Deep-Palm: 0.04
|
|
| 137 | - | - | - |
Deep-Palm: 0.13
|
|
| 191 | - | - | - |
Deep-Palm: 0.44
|
|
| 208 | - | - | - |
GPS-Palm: 0.68
Deep-Palm: 0.25
|
|
| 297 | - | - | - |
GPS-Palm: 0.85
Deep-Palm: 0.96
|
|
| 328 | - | - | - |
GPS-Palm: 0.76
Deep-Palm: 0.92
|
|
| 349 | - | - | - |
GPS-Palm: 0.87
Deep-Palm: 0.86
|
|
| 390 | - | - | - |
Deep-Palm: 0.56
|
|
| 466 | - | - | - |
Deep-Palm: 0.15
|
|
| 540 | - | - | - |
GPS-Palm: 0.89
Deep-Palm: 0.22
|
|
| 571 | - | - | - |
Deep-Palm: 0.16
|
|
| 575 | - | - | - |
Deep-Palm: 0.24
|
|
| 586 | - | - | - |
Deep-Palm: 0.09
|
|
| 587 | - | - | - |
GPS-Palm: 0.72
Deep-Palm: 0.09
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Conservation score for cysteine
PhyloP for Cysteine
PhastCons Conservation Scores for Cysteine
TCGA Cysteine Mutation Information
Note: Mutations indicate amino acid changes that may create potential palmitoylation sites.
| Position | Amino Acid Change | Frequency | Type | Function | Cancer Type |
|---|---|---|---|---|---|
| 52 | C → Y | 0.002288 | SNP | Missense Mutation | STAD |
| 53 | C → C | 0.002288 | SNP | Silent | STAD |
| 84 | C → C | 0.002020 | SNP | Silent | PRAD |
| 88 | S → C | 0.001969 | SNP | Missense Mutation | LGG |
| 207 | G → C | 0.002747 | SNP | Missense Mutation | LIHC |
| 208 | C → S | 0.002545 | SNP | Missense Mutation | GBM |
| 208 | C → Y | 0.001887 | SNP | Missense Mutation | UCEC |
| 320 | R → C | 0.002141 | SNP | Missense Mutation | SKCM |
| 328 | C → R | 0.002020 | SNP | Missense Mutation | PRAD |
| 540 | C → C | 0.001887 | SNP | Silent | UCEC |
| 555 | R → C | 0.002141 | SNP | Missense Mutation | SKCM |
| 587 | C → C | 0.001887 | SNP | Silent | UCEC |
| 587 | C → C | 0.003460 | SNP | Silent | CESC |
| ? | ? → ? | 0.002020 | SNP | Missense Mutation | PRAD |