Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| P53798 | Fdft1 | Squalene synthase (SQS) (SS) (EC … | Mus musculus (Mouse) | 416 aa |
Protein Details: P53798 (Fdft1)
Protein Information
| Accession | P53798 |
|---|---|
| Protein Names | Squalene synthase (SQS) (SS) (EC 2.5.1.21) (FPP:FPP farnesyltransferase) (Farnesyl-diphosphate farnesyltransferase) |
| Gene Symbol | Fdft1 |
| Organism | Mus musculus (Mouse) |
| Length | 416 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MEFVKCLGHP11EEFYNLLRFR21MGGRRNFIPK31MDQDSLSSSL41KTCYKYLNQT
51-10051SRSFAAVIQA61LDGDIRHAIC71VFYLVLRALD81TVEDDMSISV91EKKIPLLCNF
101-150101HTFLYDPEWR111FTESKEKDRQ121VLEDFPTISL131EFRNLAEKYQ141TVIDDICHRM
151-200151GCGMAEFVDK161DVTSKQDWDK171YCHYVAGLVG181IGLSRLFSAS191EFEDPIVGED
201-250201IECANSMGLF211LQKTNIIRDY221LEDQQEGRKF231WPQEVWGRYI241KKLEDFAKPE
251-300251NVDVAVQCLN261ELITNTLQHI271PDVLTYLSRL281RNQSVFNFCA291IPQVMAIATL
301-350301AACYNNQQVF311KGVVKIRKGQ321AVTLMMDATN331MPAVKAIIYQ341YIEEIYHRIP
351-400351NSDPSSSKTK361QVISKIRTQN371LPNCQLISRS381HYSPIYLSFI391MLLAALSWQY
401-416401LSTLSQVTED411YVQREH
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 6 | - | - | - |
GPS-Palm: 0.83
Deep-Palm: 0.02
|
|
| 43 | Isoprenoid synthase domain superfamily | - | - |
GPS-Palm: 0.80
Deep-Palm: 0.84
|
|
| 70 | - | - | - |
GPS-Palm: 0.82
Deep-Palm: 0.81
|
|
| 98 | - | - | - |
Deep-Palm: 0.28
|
|
| 147 | - | - | - |
Deep-Palm: 0.13
|
|
| 152 | - | - | - |
Deep-Palm: 0.09
|
|
| 172 | - | - | - |
Deep-Palm: 0.64
|
|
| 203 | - | - | - |
Deep-Palm: 0.57
|
|
| 258 | - | - | - |
Deep-Palm: 0.67
|
|
| 289 | - | - | - |
GPS-Palm: 0.73
Deep-Palm: 0.58
|
|
| 303 | - | - | - |
GPS-Palm: 0.81
Deep-Palm: 0.55
|
|
| 374 | SWISSPALM DBPTM CYSMODDB | - |
Liver
(28526873)
| - |
GPS-Palm: 0.88
Deep-Palm: 0.69
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
1
Liver
Specificity: 1.000
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.