Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| P54071 | Idh2 | Isocitrate dehydrogenase [NADP], mitochondrial (IDH) … | Mus musculus (Mouse) | 452 aa |
Protein Details: P54071 (Idh2)
Protein Information
| Accession | P54071 |
|---|---|
| Protein Names | Isocitrate dehydrogenase [NADP], mitochondrial (IDH) (EC 1.1.1.42) (ICD-M) (IDP) (NADP(+)-specific ICDH) (Oxalosuccinate decarboxylase) |
| Gene Symbol | Idh2 |
| Organism | Mus musculus (Mouse) |
| Length | 452 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 29660268 29733200 34200797 34884899 35358180 35477839 37925639 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MAGYLRAVSS11LCRASGSART21WAPAALTVPS31WPEQPRRHYA41EKRIKVEKPV
51-10051VEMDGDEMTR61IIWQFIKEKL71ILPHVDVQLK81YFDLGLPNRD91QTNDQVTIDS
101-150101ALATQKYSVA111VKCATITPDE121ARVEEFKLKK131MWKSPNGTIR141NILGGTVFRE
151-200151PIICKNIPRL161VPGWTKPITI171GRHAHGDQYK181ATDFVVDRAG191TFKLVFTPKD
201-250201GSSAKEWEVY211NFPAGGVGMG221MYNTDESISG231FAHSCFQYSI241QKKWPLYLST
251-300251KNTILKAYDG261RFKDIFQEIF271DKHYKTDFDK281NKIWYEHRLI291DDMVAQVLKS
301-350301SGGFVWACKN311YDGDVQSDIL321AQGFGSLGLM331TSVLVCPDGK341TIEAEAAHGT
351-400351VTRHYREHQK361GRPTSTNPIA371SIFAWTRGLE381HRGKLDGNQD391LIRFAQTLEK
401-450401VCVQTVESGA411MTKDLAGCIH421GLSNVKLNEH431FLNTTDFLDT441IKSNLDRALG
451-452451KQ
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 12 | - | - | - |
GPS-Palm: 0.82
Deep-Palm: 0.68
|
|
| 113 | - |
Brain
(34200797)
|
Brain
(35358180)
|
GPS-Palm: 0.76
Deep-Palm: 0.94
|
|
| 154 | SWISSPALM DBPTM CYSMODDB | - |
liver
(26165157)
| - |
GPS-Palm: 0.77
Deep-Palm: 0.89
|
| 235 | - | - | - |
GPS-Palm: 0.79
Deep-Palm: 0.50
|
|
| 308 | SWISSPALM DBPTM CYSMODDB | Isocitrate/isopropylmalate dehydrogenase |
Liver
(28526873)
|
Brain
(35358180)
|
GPS-Palm: 0.84
Deep-Palm: 0.94
|
| 336 | - | - | - |
GPS-Palm: 0.90
Deep-Palm: 0.97
|
|
| 402 | SWISSPALM DBPTM CYSMODDB | - |
Liver
(28526873)
|
Brain
(35358180)
|
GPS-Palm: 0.86
Deep-Palm: 0.96
|
| 418 | SWISSPALM DBPTM CYSMODDB | - |
Liver
(28526873)
liver
(26165157)
MLE
(39008777)
| - |
GPS-Palm: 0.85
Deep-Palm: 0.95
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.462
6
Liver
Specificity: 0.162
6/6 (100.0%)
5
Brain
Specificity: 0.135
5/5 (100.0%)
2
Testis
Specificity: 0.054
2/2 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
24
Brain tissue (Mass)
Specificity: 0.649
24/56 (42.9%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.