Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| P54869 | Hmgcs2 | Hydroxymethylglutaryl-CoA synthase, mitochondrial (HMG-CoA synthase) … | Mus musculus (Mouse) | 508 aa |
Protein Details: P54869 (Hmgcs2)
Protein Information
| Accession | P54869 |
|---|---|
| Protein Names | Hydroxymethylglutaryl-CoA synthase, mitochondrial (HMG-CoA synthase) (EC 2.3.3.10) (3-hydroxy-3-methylglutaryl coenzyme A synthase) |
| Gene Symbol | Hmgcs2 |
| Organism | Mus musculus (Mouse) |
| Length | 508 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 29660268 34884899 35477839 37925639 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MQRLLAPARR11VLQVKRAMQE21TSLTPAHLLS31AAQQRFSTIP41PAPLAKTDTW
51-10051PKDVGILALE61VYFPAQYVDQ71TDLEKFNNVE81AGKYTVGLGQ91TRMGFCSVQE
101-150101DINSLCLTVV111QRLMERTKLP121WDAVGRLEVG131TETIIDKSKA141VKTVLMELFQ
151-200151DSGNTDIEGI161DTTNACYGGT171ASLFNAANWM181ESSYWDGRYA191LVVCGDIAVY
201-250201PSGNARPTGG211AGAVAMLIGP221KAPLVLEQGL231RGTHMENAYD241FYKPNLASEY
251-300251PLVDGKLSIQ261CYLRALDRCY271AAYRKKIQNQ281WKQAGNNQPF291TLDDVQYMIF
301-350301HTPFCKMVQK311SLARLMFNDF321LSSSSDKQNN331LYKGLEAFRG341LKLEETYTNK
351-400351DVDKALLKAS361LDMFNQKTKA371SLYLSTNNGN381MYTSSLYGCL391ASLLSHHSAQ
401-450401ELAGSRIGAF411SYGSGLAASF421FSFRVSKDAS431PGSPLEKLVS441SVSDLPKRLD
451-500451SRRRMSPEEF461TEIMNQREQF471YHKVNFSPPG481DTSNLFPGTW491YLERVDEMHR
501-508501RKYARCPV
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 96 | SWISSPALM DBPTM CYSMODDB | Hydroxymethylglutaryl-coenzyme A synthase N terminal |
Liver
(28526873)
|
Liver
(37925639)
|
GPS-Palm: 0.88
Deep-Palm: 0.92
|
| 106 | SWISSPALM DBPTM CYSMODDB | Hydroxymethylglutaryl-coenzyme A synthase N terminal |
Liver
(28526873)
|
Liver
(37925639)
|
GPS-Palm: 0.84
Deep-Palm: 0.84
|
| 166 | - | - | - |
Deep-Palm: 0.62
|
|
| 194 | - | - | - |
Deep-Palm: 0.48
|
|
| 261 | SWISSPALM DBPTM CYSMODDB | Hydroxymethylglutaryl-coenzyme A synthase C terminal |
Liver
(28526873)
|
Liver
(37925639)
|
GPS-Palm: 0.77
Deep-Palm: 0.97
|
| 269 | - | - | - |
GPS-Palm: 0.85
Deep-Palm: 0.89
|
|
| 305 | SWISSPALM DBPTM CYSMODDB | Hydroxymethylglutaryl-coenzyme A synthase C terminal |
Liver
(28526873)
| - |
GPS-Palm: 0.77
Deep-Palm: 0.63
|
| 389 | SWISSPALM DBPTM CYSMODDB | Hydroxymethylglutaryl-coenzyme A synthase C terminal |
Liver
(28526873)
|
Liver
(34884899)
|
Deep-Palm: 0.89
|
| 506 | - | - | - |
GPS-Palm: 0.93
Deep-Palm: 0.03
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.667
6
Liver
Specificity: 0.400
6/6 (100.0%)
2
Testis
Specificity: 0.133
2/2 (100.0%)
1
Brain
Specificity: 0.067
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
6
Liver tissue (Mass)
Specificity: 0.400
6/8 (75.0%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.