Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| P56391 | Cox6b1 | Cytochrome c oxidase subunit 6B1 … | Mus musculus (Mouse) | 86 aa |
Protein Details: P56391 (Cox6b1)
Protein Information
| Accession | P56391 |
|---|---|
| Protein Names | Cytochrome c oxidase subunit 6B1 (Cytochrome c oxidase subunit VIb isoform 1) (COX VIb-1) |
| Gene Symbol | Cox6b1 |
| Organism | Mus musculus (Mouse) |
| Length | 86 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 29733200 34200797 35358180 37925639 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MAEDIKTKIK11NYKTAPFDSR21FPNQNQTKNC31WQNYLDFHRC41EKAMTAKGGD
51-8651VSVCEWYRRV61YKSLCPVSWV71SAWDDRIAEG81TFPGKI
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 30 | SWISSPALM DBPTM CYSMODDB | Cytochrome oxidase c subunit VIb-like Cytochrome c oxidase subunit 6B/Cytochrome c oxidase assembly factor 6-like superfamily Cytochrome c oxidase, subunit VIb Cytochrome oxidase c subunit VIb |
Liver
(28526873)
|
Brain
(35358180)
Brain
(31311849)
|
Deep-Palm: 0.05
|
| 40 | Cytochrome oxidase c subunit VIb-like Cytochrome c oxidase subunit 6B/Cytochrome c oxidase assembly factor 6-like superfamily Coiled coil-helix-coiled coil-helix (CHCH) domain profile. Cytochrome c oxidase, subunit VIb Cyt c Oxidase VIb Cytochrome oxidase c subunit VIb |
Brain
(34200797)
| - |
Deep-Palm: 0.16
|
|
| 54 | SWISSPALM DBPTM CYSMODDB | Cytochrome oxidase c subunit VIb |
MLE
(39008777)
Liver
(28526873)
|
Brain
(35358180)
|
GPS-Palm: 0.90
Deep-Palm: 0.88
|
| 65 | SWISSPALM DBPTM CYSMODDB | Cytochrome oxidase c subunit VIb |
Liver
(28526873)
|
Brain
(35358180)
Brain
(31311849)
|
Deep-Palm: 0.90
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.571
4
Brain
Specificity: 0.078
4/4 (100.0%)
3
Liver
Specificity: 0.059
3/3 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
44
Brain tissue (Mass)
Specificity: 0.863
44/56 (78.6%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.