Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| P58466 | Ctdsp1 | Carboxy-terminal domain RNA polymerase II … | Mus musculus (Mouse) | 261 aa |
Protein Details: P58466 (Ctdsp1)
Protein Information
| Accession | P58466 |
|---|---|
| Protein Names | Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 (EC 3.1.3.16) (Golli-interacting protein) (GIP) (Nuclear LIM interactor-interacting factor 3) (NLI-interacting factor 3) (Small C-terminal domain phosphatase 1) (SCP1) (Small CTD phosphatase 1) |
| Gene Symbol | Ctdsp1 |
| Organism | Mus musculus (Mouse) |
| Length | 261 aa |
| Isoforms | No isoforms |
| Related PMIDs | 31772009 34884899 37925639 |
| Database Sources | SwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MDSSAVITQI11SKEEARGPLR21GKGDQKSAVS31QKPRSRGILH41SLFCCVCRDD
51-10051GEPLPAHSGA61PLLVEENGAI71PKHTPVQYLL81PEAKAQDSDK91ICVVIDLDET
101-150101LVHSSFKPVN111NADFIIPVEI121DGVVHQVYVL131KRPHVDEFLQ141RMGELFECVL
151-200151FTASLAKYAD161PVADLLDKWG171AFRARLFRES181CVFHRGNYVK191DLSRLGRDLR
201-250201RVLILDNSPA211SYVFHPDNAV221PVASWFDNMS231DTELHDLLPF241FEQLSRVDDV
251-261251YSVLRQPRPG261S
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 44 | - | - | - |
GPS-Palm: 0.95
Deep-Palm: 0.95
|
|
| 45 | - | - | - |
GPS-Palm: 0.94
Deep-Palm: 0.95
|
|
| 47 | - | - | - |
GPS-Palm: 0.78
Deep-Palm: 0.95
|
|
| 92 | - | - | - |
Deep-Palm: 0.90
|
|
| 148 | - | - | - |
GPS-Palm: 0.91
Deep-Palm: 0.72
|
|
| 181 | - | - | - |
GPS-Palm: 0.87
Deep-Palm: 0.97
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.833
5
Liver
Specificity: 0.833
5/5 (100.0%)
1
NSC
Specificity: 0.167
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.