Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| P60335 | Pcbp1 | Poly(rC)-binding protein 1 (Alpha-CP1) (Heterogeneous … | Mus musculus (Mouse) | 356 aa |
Protein Details: P60335 (Pcbp1)
Protein Information
| Accession | P60335 |
|---|---|
| Protein Names | Poly(rC)-binding protein 1 (Alpha-CP1) (Heterogeneous nuclear ribonucleoprotein E1) (hnRNP E1) |
| Gene Symbol | Pcbp1 |
| Organism | Mus musculus (Mouse) |
| Length | 356 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 29575903 29733200 31311849 34200797 34884899 35358180 35477839 37925639 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MDAGVTESGL11NVTLTIRLLM21HGKEVGSIIG31KKGESVKRIR41EESGARINIS
51-10051EGNCPERIIT61LTGPTNAIFK71AFAMIIDKLE81EDINSSMTNS91TAASRPPVTL
101-150101RLVVPATQCG111SLIGKGGCKI121KEIRESTGAQ131VQVAGDMLPN141STERAITIAG
151-200151VPQSVTECVK161QICLVMLETL171SQSPQGRVMT181IPYQPMPASS191PVICAGGQDR
201-250201CSDAAGYPHA211THDLEGPPLD221AYSIQGQHTI231SPLDLAKLNQ241VARQQSHFAM
251-300251MHGGTGFAGI261DSSSPEVKGY271WASLDASTQT281THELTIPNNL291IGCIIGRQGA
301-350301NINEIRQMSG311AQIKIANPVE321GSSGRQVTIT331GSAASISLAQ341YLINARLSSE
351-356351KGMGCS
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 54 | SWISSPALM DBPTM CYSMODDB | KH domain |
Brain
(31311849)
brain
(39008777)
MLE
(39008777)
Liver
(28526873)
|
Brain
(35358180)
Brain
(31311849)
|
Deep-Palm: 0.96
|
| 109 | SWISSPALM DBPTM CYSMODDB | KH domain |
Brain
(31311849)
brain
(39008777)
MLE
(39008777)
Liver
(28526873)
|
Brain
(35358180)
Brain
(31311849)
|
GPS-Palm: 0.88
Deep-Palm: 0.96
|
| 118 | - | - | - |
GPS-Palm: 0.69
Deep-Palm: 0.89
|
|
| 158 | SWISSPALM DBPTM CYSMODDB | - |
Liver
(28526873)
|
Brain
(35358180)
|
GPS-Palm: 0.83
Deep-Palm: 0.84
|
| 163 | SWISSPALM DBPTM CYSMODDB | - |
Liver
(28526873)
| - |
GPS-Palm: 0.73
Deep-Palm: 0.88
|
| 194 | SWISSPALM DBPTM CYSMODDB | - |
Liver
(28526873)
|
Brain
(35358180)
|
Deep-Palm: 0.46
|
| 201 | - |
Brain
(34200797)
|
Brain
(35358180)
|
Deep-Palm: 0.53
|
|
| 293 | - | - | - |
GPS-Palm: 0.86
Deep-Palm: 0.54
|
|
| 355 | - | - | - |
GPS-Palm: 0.97
Deep-Palm: 0.03
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.400
6
Liver
Specificity: 0.143
6/6 (100.0%)
5
Brain
Specificity: 0.119
5/5 (100.0%)
2
Raw 264.7
Specificity: 0.048
2/2 (100.0%)
2
Testis
Specificity: 0.048
2/2 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
27
Brain tissue (Mass)
Specificity: 0.643
27/56 (48.2%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.