Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| P62317 | Snrpd2 | Small nuclear ribonucleoprotein Sm D2 … | Mus musculus (Mouse) | 118 aa |
Protein Details: P62317 (Snrpd2)
Protein Information
| Accession | P62317 |
|---|---|
| Protein Names | Small nuclear ribonucleoprotein Sm D2 (Sm-D2) (snRNP core protein D2) |
| Gene Symbol | Snrpd2 |
| Organism | Mus musculus (Mouse) |
| Length | 118 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 29733200 35477839 37925639 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MSLLNKPKSE11MTPEELQKRE21EEEFNTGPLS31VLTQSVKNNT41QVLINCRNNK
51-10051KLLGRVKAFD61RHCNMVLENV71KEMWTEVPKS81GKGKKKSKPV91NKDRYISKMF
101-118101LRGDSVIVVL111RNPLIAGK
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 46 | SWISSPALM DBPTM CYSMODDB | LSM domain Sm domain, eukaryotic/archaea-type Sm domain LSM domain superfamily Small nuclear ribonucleoprotein Sm D2 |
Liver
(28526873)
|
Liver
(37925639)
Brain
(35358180)
|
Deep-Palm: 0.83
|
| 63 | - | - |
Brain
(35358180)
|
Deep-Palm: 0.34
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.571
4
Liver
Specificity: 0.190
4/4 (100.0%)
2
Testis
Specificity: 0.095
2/2 (100.0%)
1
Brain
Specificity: 0.048
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.857
12
Brain tissue (Mass)
Specificity: 0.571
12/56 (21.4%)
2
Liver tissue (Mass)
Specificity: 0.095
2/8 (25.0%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.