Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| P62748 | Hpcal1 | Hippocalcin-like protein 1 (Neural visinin-like … | Mus musculus (Mouse) | 193 aa |
Protein Details: P62748 (Hpcal1)
Protein Information
| Accession | P62748 |
|---|---|
| Protein Names | Hippocalcin-like protein 1 (Neural visinin-like protein 3) (NVL-3) (NVP-3) (Visinin-like protein 3) (VILIP-3) |
| Gene Symbol | Hpcal1 |
| Organism | Mus musculus (Mouse) |
| Length | 193 aa |
| Isoforms | No isoforms |
| Related PMIDs | 34200797 35358180 35477839 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MGKQNSKLRP11EVLQDLREHT21EFTDHELQEW31YKGFLKDCPT41GHLTVDEFKK
51-10051IYANFFPYGD61ASKFAEHVFR71TFDTNSDGTI81DFREFIIALS91VTSRGKLEQK
101-150101LKWAFSMYDL111DGNGYISRSE121MLEIVQAIYK131MVSSVMKMPE141DESTPEKRTD
151-193151KIFRQMDTNN161DGKLSLEEFI171KGAKSDPSIV181RLLQCDPSSA191SQF
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 38 | SWISSPALM DBPTM CYSMODDB | EF-hand domain pair Recoverin family |
Forebrain
(28680068)
|
Brain
(35358180)
|
Deep-Palm: 0.72
|
| 185 | - |
brain
(39008777)
|
Brain
(35358180)
|
Deep-Palm: 0.15
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.600
3
Brain
Specificity: 0.136
3/3 (100.0%)
2
Testis
Specificity: 0.091
2/2 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
17
Brain tissue (Mass)
Specificity: 0.773
17/56 (30.4%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.