Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| P62874 | Gnb1 | Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit … | Mus musculus (Mouse) | 340 aa |
Protein Details: P62874 (Gnb1)
Protein Information
| Accession | P62874 |
|---|---|
| Protein Names | Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 (Transducin beta chain 1) |
| Gene Symbol | Gnb1 |
| Organism | Mus musculus (Mouse) |
| Length | 340 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 29733200 31311849 34200797 35358180 37925639 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | dbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MSELDQLRQE11AEQLKNQIRD21ARKACADATL31SQITNNIDPV41GRIQMRTRRT
51-10051LRGHLAKIYA61MHWGTDSRLL71VSASQDGKLI81IWDSYTTNKV91HAIPLRSSWV
101-150101MTCAYAPSGN111YVACGGLDNI121CSIYNLKTRE131GNVRVSRELA141GHTGYLSCCR
151-200151FLDDNQIVTS161SGDTTCALWD171IETGQQTTTF181TGHTGDVMSL191SLAPDTRLFV
201-250201SGACDASAKL211WDVREGMCRQ221TFTGHESDIN231AICFFPNGNA241FATGSDDATC
251-300251RLFDLRADQE261LMTYSHDNII271CGITSVSFSK281SGRLLLAGYD291DFNCNVWDAL
301-340301KADRAGVLAG311HDNRVSCLGV321TDDGMAVATG331SWDSFLKIWN
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 25 | DBPTM SWISSPALM | WD40/YVTN repeat-like-containing domain superfamily G protein beta WD-40 repeat protein |
Brain
(31311849)
Liver
(28526873)
|
Brain
(35358180)
Brain
(31311849)
|
GPS-Palm: 0.88
Deep-Palm: 0.91
|
| 103 | - | - |
Brain
(35358180)
|
GPS-Palm: 0.67
Deep-Palm: 0.35
|
|
| 114 | - | - |
Brain
(35358180)
|
Deep-Palm: 0.17
|
|
| 121 | - | - |
Brain
(35358180)
|
GPS-Palm: 0.66
Deep-Palm: 0.73
|
|
| 148 | G protein beta WD-40 repeat protein |
Brain
(34200797)
|
Brain
(35358180)
Brain
(31311849)
|
GPS-Palm: 0.82
Deep-Palm: 0.84
|
|
| 149 | - | - |
Brain
(35358180)
Brain
(31311849)
|
GPS-Palm: 0.68
Deep-Palm: 0.83
|
|
| 166 | - | - | - |
Deep-Palm: 0.08
|
|
| 204 | G protein beta WD-40 repeat protein |
Brain
(31311849)
|
Brain
(35358180)
Brain
(31311849)
|
GPS-Palm: 0.85
Deep-Palm: 0.90
|
|
| 218 | - | - | - |
Deep-Palm: 0.42
|
|
| 233 | G protein beta WD-40 repeat protein |
Brain
(34200797)
|
Brain
(35358180)
Brain
(31311849)
|
Deep-Palm: 0.05
|
|
| 250 | G protein beta WD-40 repeat protein |
Brain
(34200797)
|
Brain
(35358180)
Brain
(31311849)
|
Deep-Palm: 0.60
|
|
| 271 | G protein beta WD-40 repeat protein |
Brain
(34200797)
|
Brain
(35358180)
|
Deep-Palm: 0.82
|
|
| 294 | G protein beta WD-40 repeat protein |
Brain
(31311849)
|
Brain
(35358180)
Brain
(31311849)
|
Deep-Palm: 0.90
|
|
| 317 | G protein beta WD-40 repeat protein |
Brain
(34200797)
|
Brain
(35358180)
|
Deep-Palm: 0.93
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.625
5
Brain
Specificity: 0.116
5/5 (100.0%)
3
Liver
Specificity: 0.070
3/3 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
35
Brain tissue (Mass)
Specificity: 0.814
35/56 (62.5%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.