Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| P63011 | Rab3a | Ras-related protein Rab-3A (EC 3.6.5.2) | Mus musculus (Mouse) | 220 aa |
Protein Details: P63011 (Rab3a)
Protein Information
| Accession | P63011 |
|---|---|
| Protein Names | Ras-related protein Rab-3A (EC 3.6.5.2) |
| Gene Symbol | Rab3a |
| Organism | Mus musculus (Mouse) |
| Length | 220 aa |
| Isoforms | No isoforms |
| Related PMIDs | 29733200 34200797 35358180 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MASATDSRYG11QKESSDQNFD21YMFKILIIGN31SSVGKTSFLF41RYADDSFTPA
51-10051FVSTVGIDFK61VKTIYRNDKR71IKLQIWDTAG81QERYRTITTA91YYRGAMGFIL
101-150101MYDITNEESF111NAVQDWSTQI121KTYSWDNAQV131LLVGNKCDME141DERVVSSERG
151-200151RQLADHLGFE161FFEASAKDNI171NVKQTFERLV181DVICEKMSES191LDTADPAVTG
201-220201AKQGPQLTDQ211QAPPHQDCAC
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 137 | Ras family |
Brain
(34200797)
|
Brain
(35358180)
|
Deep-Palm: 0.86
|
|
| 184 | - | - |
Brain
(35358180)
|
GPS-Palm: 0.78
Deep-Palm: 0.76
|
|
| 218 | SWISSPALM DBPTM CYSMODDB | - |
Forebrain
(28680068)
| - |
GPS-Palm: 0.91
Deep-Palm: 0.01
|
| 220 | - | - | - |
GPS-Palm: 0.91
Deep-Palm: 0.01
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
4
Brain
Specificity: 0.114
4/4 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
31
Brain tissue (Mass)
Specificity: 0.886
31/56 (55.4%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.