Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| P63158 | Hmgb1 | High mobility group protein B1 … | Mus musculus (Mouse) | 215 aa |
Protein Details: P63158 (Hmgb1)
Protein Information
| Accession | P63158 |
|---|---|
| Protein Names | High mobility group protein B1 (High mobility group protein 1) (HMG-1) |
| Gene Symbol | Hmgb1 |
| Organism | Mus musculus (Mouse) |
| Length | 215 aa |
| Isoforms | No isoforms |
| Related PMIDs | 29733200 34884899 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MGKGDPKKPR11GKMSSYAFFV21QTCREEHKKK31HPDASVNFSE41FSKKCSERWK
51-10051TMSAKEKGKF61EDMAKADKAR71YEREMKTYIP81PKGETKKKFK91DPNAPKRPPS
101-150101AFFLFCSEYR111PKIKGEHPGL121SIGDVAKKLG131EMWNNTAADD141KQPYEKKAAK
151-200151LKEKYEKDIA161AYRAKGKPDA171AKKGVVKAEK181SKKKKEEEDD191EEDEEDEEEE
201-215201EEEEDEDEEE211DDDDE
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 23 | High Mobility Group Box (HMGB) High mobility group box domain High mobility group box domain superfamily | - |
Brain
(35358180)
|
GPS-Palm: 0.66
Deep-Palm: 0.49
|
|
| 45 | High Mobility Group Box (HMGB) HMG-box HMGB rpt1 High mobility group box domain superfamily High mobility group box domain | - | - |
Deep-Palm: 0.46
|
|
| 106 | SWISSPALM DBPTM CYSMODDB | HMG (high mobility group) box | - |
Brain
(35358180)
Brain
(31311849)
|
GPS-Palm: 0.91
Deep-Palm: 0.96
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.667
2
Liver
Specificity: 0.133
2/2 (100.0%)
1
Brain
Specificity: 0.067
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
12
Brain tissue (Mass)
Specificity: 0.800
12/56 (21.4%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.