Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| P68040 | Rack1 | Small ribosomal subunit protein RACK1 … | Mus musculus (Mouse) | 317 aa |
Protein Details: P68040 (Rack1)
Protein Information
| Accession | P68040 |
|---|---|
| Protein Names | Small ribosomal subunit protein RACK1 (12-3) (Guanine nucleotide-binding protein subunit beta-2-like 1) (Receptor for activated C kinase) (Receptor of activated protein C kinase 1) (Receptor of activated protein kinase C 1) (p205) [Cleaved into: Small ribosomal subunit protein RACK1, N-terminally processed (Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed) (Receptor of activated protein C kinase 1, N-terminally processed)] |
| Gene Symbol | Rack1 |
| Organism | Mus musculus (Mouse) |
| Length | 317 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 29575903 29733200 34884899 35477839 37925639 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MTEQMTLRGT11LKGHNGWVTQ21IATTPQFPDM31ILSASRDKTI41IMWKLTRDET
51-10051NYGIPQRALR61GHSHFVSDVV71ISSDGQFALS81GSWDGTLRLW91DLTTGTTTRR
101-150101FVGHTKDVLS111VAFSSDNRQI121VSGSRDKTIK131LWNTLGVCKY141TVQDESHSEW
151-200151VSCVRFSPNS161SNPIIVSCGW171DKLVKVWNLA181NCKLKTNHIG191HTGYLNTVTV
201-250201SPDGSLCASG211GKDGQAMLWD221LNEGKHLYTL231DGGDIINALC241FSPNRYWLCA
251-300251ATGPSIKIWD261LEGKIIVDEL271KQEVISTSSK281AEPPQCTSLA291WSADGQTLFA
301-317301GYTDNLVRVW311QVTIGTR
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 138 | SWISSPALM DBPTM CYSMODDB | WD domain G-beta repeat |
Liver
(28526873)
|
Brain
(35358180)
|
GPS-Palm: 0.88
Deep-Palm: 0.87
|
| 153 | SWISSPALM DBPTM CYSMODDB | WD domain G-beta repeat |
Liver
(28526873)
|
Brain
(35358180)
|
Deep-Palm: 0.13
|
| 168 | SWISSPALM DBPTM CYSMODDB | WD domain G-beta repeat |
Liver
(28526873)
|
Brain
(35358180)
|
GPS-Palm: 0.86
Deep-Palm: 0.25
|
| 182 | SWISSPALM DBPTM CYSMODDB | WD domain G-beta repeat |
Liver
(28526873)
|
Brain
(35358180)
|
GPS-Palm: 0.94
Deep-Palm: 0.81
|
| 207 | SWISSPALM DBPTM CYSMODDB | WD domain G-beta repeat |
Liver
(28526873)
|
Brain
(35358180)
|
GPS-Palm: 0.69
Deep-Palm: 0.77
|
| 240 | SWISSPALM DBPTM CYSMODDB | WD domain G-beta repeat |
Liver
(28526873)
|
Liver
(34884899)
Brain
(35358180)
|
GPS-Palm: 0.89
Deep-Palm: 0.59
|
| 249 | SWISSPALM DBPTM CYSMODDB | WD domain G-beta repeat |
Liver
(28526873)
| - |
GPS-Palm: 0.85
Deep-Palm: 0.68
|
| 286 | SWISSPALM DBPTM CYSMODDB | WD domain G-beta repeat |
Liver
(28526873)
Forebrain
(28680068)
|
Brain
(35358180)
|
Deep-Palm: 0.85
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.545
6
Liver
Specificity: 0.162
6/6 (100.0%)
2
Raw 264.7
Specificity: 0.054
2/2 (100.0%)
2
Testis
Specificity: 0.054
2/2 (100.0%)
1
Brain
Specificity: 0.027
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.692
18
Brain tissue (Mass)
Specificity: 0.486
18/56 (32.1%)
8
Macrophage Raw 264.7 (Mass)
Specificity: 0.216
8/10 (80.0%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.