Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| P68373 | Tuba1c | Tubulin alpha-1C chain (EC 3.6.5.-) … | Mus musculus (Mouse) | 449 aa |
Protein Details: P68373 (Tuba1c)
Protein Information
| Accession | P68373 |
|---|---|
| Protein Names | Tubulin alpha-1C chain (EC 3.6.5.-) (Alpha-tubulin 6) (Alpha-tubulin isotype M-alpha-6) (Tubulin alpha-6 chain) [Cleaved into: Detyrosinated tubulin alpha-1C chain] |
| Gene Symbol | Tuba1c |
| Organism | Mus musculus (Mouse) |
| Length | 449 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 34200797 34884899 37925639 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MRECISIHVG11QAGVQIGNAC21WELYCLEHGI31QPDGQMPSDK41TIGGGDDSFN
51-10051TFFSETGAGK61HVPRAVFVDL71EPTVIDEVRT81GTYRQLFHPE91QLITGKEDAA
101-150101NNYARGHYTI111GKEIIDLVLD121RIRKLADQCT131GLQGFLVFHS141FGGGTGSGFT
151-200151SLLMERLSVD161YGKKSKLEFS171IYPAPQVSTA181VVEPYNSILT191THTTLEHSDC
201-250201AFMVDNEAIY211DICRRNLDIE221RPTYTNLNRL231ISQIVSSITA241SLRFDGALNV
251-300251DLTEFQTNLV261PYPRIHFPLA271TYAPVISAEK281AYHEQLTVAE291ITNACFEPAN
301-350301QMVKCDPRHG311KYMACCLLYR321GDVVPKDVNA331AIATIKTKRT341IQFVDWCPTG
351-400351FKVGINYQPP361TVVPGGDLAK371VQRAVCMLSN381TTAIAEAWAR391LDHKFDLMYA
401-449401KRAFVHWYVG411EGMEEGEFSE421AREDMAALEK431DYEEVGADSA441EGDDEGEEY
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 4 | Tubulin/FtsZ, GTPase domain superfamily | - | - |
GPS-Palm: 0.94
Deep-Palm: 0.03
|
|
| 20 | Tubulin/FtsZ, GTPase domain Tubulin/FtsZ, GTPase domain superfamily OS01G0282866 PROTEIN | - | - |
Deep-Palm: 0.39
|
|
| 25 | Alpha tubulin Tubulin/FtsZ, GTPase domain Tubulin/FtsZ, GTPase domain superfamily OS01G0282866 PROTEIN | - | - |
Deep-Palm: 0.19
|
|
| 129 | - | - | - |
Deep-Palm: 0.74
|
|
| 200 | - | - | - |
Deep-Palm: 0.07
|
|
| 213 | - | - | - |
GPS-Palm: 0.79
Deep-Palm: 0.16
|
|
| 295 | CYSMODDB SWISSPALM DBPTM | Tubulin C-terminal domain |
Liver
(28526873)
| - |
GPS-Palm: 0.65
Deep-Palm: 0.19
|
| 305 | - | - | - |
Deep-Palm: 0.17
|
|
| 315 | CYSMODDB SWISSPALM DBPTM | Tubulin C-terminal domain |
Brain
(34200797)
Liver
(28526873)
|
Brain
(35358180)
Brain
(31311849)
|
GPS-Palm: 0.85
Deep-Palm: 0.59
|
| 316 | CYSMODDB SWISSPALM DBPTM | Tubulin C-terminal domain |
Liver
(28526873)
|
Brain
(35358180)
Brain
(31311849)
|
GPS-Palm: 0.93
Deep-Palm: 0.79
|
| 347 | CYSMODDB SWISSPALM DBPTM | Tubulin C-terminal domain |
Liver
(28526873)
|
Brain
(35358180)
Brain
(31311849)
|
GPS-Palm: 0.85
Deep-Palm: 0.25
|
| 376 | CYSMODDB SWISSPALM DBPTM | Tubulin C-terminal domain |
Liver
(28526873)
|
Brain
(35358180)
Brain
(31311849)
|
GPS-Palm: 0.92
Deep-Palm: 0.97
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.714
5
Liver
Specificity: 0.179
5/5 (100.0%)
2
Brain
Specificity: 0.071
2/2 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
21
Brain tissue (Mass)
Specificity: 0.750
21/56 (37.5%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.