Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| P97445 | Cacna1a | Voltage-dependent P/Q-type calcium channel subunit … | Mus musculus (Mouse) | 2368 aa |
Protein Details: P97445 (Cacna1a)
Protein Information
| Accession | P97445 |
|---|---|
| Protein Names | Voltage-dependent P/Q-type calcium channel subunit alpha-1A (Brain calcium channel I) (BI) (Calcium channel, L type, alpha-1 polypeptide isoform 4) (Voltage-gated calcium channel subunit alpha Cav2.1) |
| Gene Symbol | Cacna1a |
| Organism | Mus musculus (Mouse) |
| Length | 2368 aa |
| Isoforms | No isoforms |
| Related PMIDs | 29660268 29733200 31311849 34200797 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MARFGDEMPG11RYGAGGGGSG21PAAGVVVGAA31GGRGAGGSRQ41GGQPGAQRMY
51-10051KQSMAQRART61MALYNPIPVR71QNCLTVNRSL81FLFSEDNVVR91KYAKKITEWP
101-150101PFEYMILATI111IANCIVLALE121QHLPDDDKTP131MSERLDDTEP141YFIGIFCFEA
151-200151GIKIVALGFA161FHKGSYLRNG171WNVMDFVVVL181TGILATVGTE191FDLRTLRAVR
201-250201VLRPLKLVSG211IPSLQVVLKS221IMKAMIPLLQ231IGLLLFFAIL241IFAIIGLEFY
251-300251MGKFHTTCFE261EGTDDIQGES271PAPCGTEEPA281RTCPNGTKCQ291PYWEGPNNGI
301-350301TQFDNILFAV311LTVFQCITME321GWTDLLYNSN331DASGNTWNWL341YFIPLIIIGS
351-400351FFMLNLVLGV361LSGEFAKERE371RVENRRAFLK381LRRQQQIERE391LNGYMEWISK
401-450401AEEVILAEDE411TDVEQRHPFD421GALRRATLKK431SKTDLLNPEE441AEDQLADIAS
451-500451VGSPFARASI461KSAKLENSTF471FHKKERRMRF481YIRRMVKTQA491FYWTVLSLVA
501-550501LNTLCVAIVH511YNQPEWLSDF521LYYAEFIFLG531LFMSEMFIKM541YGLGTRPYFH
551-600551SSFNCFDCGV561IIGSIFEVIW571AVIKPGTSFG581ISVLRALRLL591RIFKVTKYWA
601-650601SLRNLVVSLL611NSMKSIISLL621FLLFLFIVVF631ALLGMQLFGG641QFNFDEGTPP
651-700651TNFDTFPAAI661MTVFQILTGE671DWNEVMYDGI681KSQGGVQGGM691VFSIYFIVLT
701-750701LFGNYTLLNV711FLAIAVDNLA721NAQELTKDEQ731EEEEAANQKL741ALQKAKEVAE
751-800751VSPLSAANMS761IAVKEQQKNQ771KPTKSVWEQR781TSEMRKQNLL791ASREALYGDA
801-850801AERWPTPYAR811PLRPDVKTHL821DRPLVVDPQE831NRNNNTNKSR841APEALRPTAR
851-900851PRESARDPDA861RRAWPGSPER871APGREGPYGR881ESEPQQREHA891PPREHAPWDA
901-950901DTERAKAGDA911PRRHTHRPVA921EGEPRRHRAR931RRPGDEPDDR941PERRPRPRDA
951-1000951TRPARAADGE961GDDGERKRRH971RHGPPAHDDR981ERRHRRRKEN991QGSGVPVSGP
1001-10501001NLSTTRPIQQ1011DLGRQDLPLA1021EDLDNMKNNK1031LATGEPASPH1041DSLGHSGLPP
1051-11001051SPAKIGNSTN1061PGPALATNPQ1071NAASRRTPNN1081PGNPSNPGPP1091KTPENSLIVT
1101-11501101NPSSTQPNSA1111KTARKPEHMA1121VEIPPACPPL1131NHTVVQVNKN1141ANPDPLPKKE
1151-12001151EEKKEEEEAD1161PGEDGPKPMP1171PYSSMFILST1181TNPLRRLCHY1191ILNLRYFEMC
1201-12501201ILMVIAMSSI1211ALAAEDPVQP1221NAPRNNVLRY1231FDYVFTGVFT1241FEMVIKMIDL
1251-13001251GLVLHQGAYF1261RDLWNILDFI1271VVSGALVAFA1281FTGNSKGKDI1291NTIKSLRVLR
1301-13501301VLRPLKTIKR1311LPKLKAVFDC1321VVNSLKNVFN1331ILIVYMLFMF1341IFAVVAVQLF
1351-14001351KGKFFHCTDE1361SKEFERDCRG1371KYLLYEKNEV1381KARDREWKKY1391EFHYDNVLWA
1401-14501401LLTLFTVSTG1411EGWPQVLKHS1421VDATFENQGP1431SPGYRMEMSI1441FYVVYFVVFP
1451-15001451FFFVNIFVAL1461IIITFQEQGD1471KMMEEYSLEK1481NERACIDFAI1491SAKPLTRHMP
1501-15501501QNKQSFQYRM1511WQFVVSPPFE1521YTIMAMIALN1531TIVLMMKFYG1541ASVAYENALR
1551-16001551VFNIVFTSLF1561SLECVLKVMA1571FGILNYFRDA1581WNIFDFVTVL1591GSITDILVTE
1601-16501601FGNNFINLSF1611LRLFRAARLI1621KLLRQGYTIR1631ILLWTFVQSF1641KALPYVCLLI
1651-17001651AMLFFIYAII1661GMQVFGNIGI1671DGEDEDSDED1681EFQITEHNNF1691RTFFQALMLL
1701-17501701FRSATGEAWH1711NIMLSCLSGK1721PCDKNSGILT1731ADCGNEFAYF1741YFVSFIFLCS
1751-18001751FLMLNLFVAV1761IMDNFEYLTR1771DSSILGPHHL1781DEYVRVWAEY1791DPAACGRIHY
1801-18501801KDMYSLLRVI1811SPPLGLGKKC1821PHRVACKRLL1831RMDLPVADDN1841TVHFNSTLMA
1851-19001851LIRTALDIKI1861AKGGADKQQM1871DAELRKEMMA1881IWPNLSQKTL1891DLLVTPHKST
1901-19501901DLTVGKIYAA1911MMIMEYYRQS1921KAKKLQAMRE1931EQNRTPLMFQ1941RMEPPSPTQE
1951-20001951GGPSQNALPS1961TQLDPGGGLM1971AHEGGMKESP1981SWVTQRAQEM1991FQKTGTWSPE
2001-20502001RGPPIDMPNS2011QPNSQSVEMR2021EMGTDGYSDS2031EHYLPMEGQT2041RAASMPRLPA
2051-21002051ENQRRRGRPR2061GNDLSTISDT2071SPMKRSASVL2081GPKARRLDDY2091SLERVPPEEN
2101-21502101QRYHQRRRDR2111GHRTSERSLG2121RYTDVDTGLG2131TDLSMTTQSG2141DLPSKDRDQD
2151-22002151RGRPKDRKHR2161PHHHHHHHHH2171HPPAPDRDRY2181AQERPDTGRA2191RAREQRWSRS
2201-22502201PSEGREHTTH2211RQGSSSVSGS2221PAPSTSGTST2231PRRGRRQLPQ2241TPCTPRPLVS
2251-23002251YSPAPRRPAA2261RRMAGPAAPP2271GGSPRGCRRA2281PRWPAHAPEG2291PRPRGADYTE
2301-23502301PDSPREPPGG2311AHDPAPRSPR2321TPRAAGCASP2331RHGRRLPNGY2341YAGHGAPRPR
2351-23682351TARRGAHDAY2361SESEDDWC
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 73 | SWISSPALM DBPTM CYSMODDB | - |
Brain
(31311849)
Forebrain
(28680068)
brain
(39008777)
|
Brain
(35358180)
Brain
(31311849)
|
GPS-Palm: 0.90
Deep-Palm: 0.51
|
| 114 | - | - | - |
GPS-Palm: 0.76
Deep-Palm: 0.20
|
|
| 147 | - | - | - |
Deep-Palm: 0.38
|
|
| 258 | - | - |
Brain
(31311849)
|
Deep-Palm: 0.28
|
|
| 274 | - | - |
Brain
(31311849)
|
Deep-Palm: 0.54
|
|
| 283 | - | - | - |
Deep-Palm: 0.11
|
|
| 289 | - | - | - |
Deep-Palm: 0.06
|
|
| 316 | - | - | - |
Deep-Palm: 0.05
|
|
| 505 | - | - | - |
Deep-Palm: 0.23
|
|
| 555 | - | - | - |
Deep-Palm: 0.04
|
|
| 558 | - | - | - |
Deep-Palm: 0.04
|
|
| 1127 | - | - | - |
Deep-Palm: 0.59
|
|
| 1188 | - | - | - |
GPS-Palm: 0.89
Deep-Palm: 0.38
|
|
| 1200 | - | - | - |
Deep-Palm: 0.13
|
|
| 1320 | - | - | - |
GPS-Palm: 0.92
Deep-Palm: 0.93
|
|
| 1357 | - | - | - |
GPS-Palm: 0.74
Deep-Palm: 0.59
|
|
| 1368 | - | - | - |
Deep-Palm: 0.38
|
|
| 1485 | - |
Brain
(34200797)
| - |
GPS-Palm: 0.73
Deep-Palm: 0.56
|
|
| 1564 | - | - | - |
GPS-Palm: 0.69
Deep-Palm: 0.12
|
|
| 1647 | - | - | - |
Deep-Palm: 0.24
|
|
| 1716 | - | - | - |
GPS-Palm: 0.74
Deep-Palm: 0.74
|
|
| 1722 | - | - | - |
GPS-Palm: 0.65
Deep-Palm: 0.35
|
|
| 1733 | - | - | - |
Deep-Palm: 0.19
|
|
| 1749 | - | - | - |
Deep-Palm: 0.03
|
|
| 1795 | - | - | - |
GPS-Palm: 0.75
Deep-Palm: 0.41
|
|
| 1820 | - | - | - |
GPS-Palm: 0.81
Deep-Palm: 0.97
|
|
| 1826 | - | - | - |
GPS-Palm: 0.81
Deep-Palm: 0.95
|
|
| 2243 | - |
brain
(39008777)
| - |
GPS-Palm: 0.77
Deep-Palm: 0.97
|
|
| 2277 | - | - | - |
GPS-Palm: 0.70
Deep-Palm: 0.83
|
|
| 2327 | - | - | - |
GPS-Palm: 0.95
Deep-Palm: 0.90
|
|
| 2368 | - | - | - |
GPS-Palm: 0.88
Deep-Palm: 0.02
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
5
Brain
Specificity: 0.417
5/5 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
7
Brain tissue (Mass)
Specificity: 0.583
7/56 (12.5%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.