Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| P97952 | Scn1b | Sodium channel regulatory subunit beta-1 | Mus musculus (Mouse) | 218 aa |
Protein Details: P97952 (Scn1b)
Protein Information
| Accession | P97952 |
|---|---|
| Protein Names | Sodium channel regulatory subunit beta-1 |
| Gene Symbol | Scn1b |
| Organism | Mus musculus (Mouse) |
| Length | 218 aa |
| Isoforms | No isoforms |
| Related PMIDs | 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | SwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MGTLLALVVG11AALVSSAWGG21CVEVDSDTEA31VYGMTFKILC41ISCKRRSETT
51-10051AETFTEWTFR61QKGTEEFVKI71LRYENEVLQL81EEDERFEGRV91VWNGSRGTKD
101-150101LQDLSIFITN111VTYNHSGDYE121CHVYRLLFFD131NYEHNTSVVK141KIHLEVVDKA
151-200151NRDMASIVSE161IMMYVLIVVL171TIWLVAEMVY181CYKKIAAATE191AAAQENASEY
201-218201LAITSESKEN211CTGVQVAE
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 21 | Sodium channel subunit beta-1/beta-3 | - | - |
Deep-Palm: 0.97
|
|
| 40 | Sodium channel subunit beta-1/beta-3 | - |
Brain
(35358180)
|
GPS-Palm: 0.95
Deep-Palm: 0.53
|
|
| 43 | Sodium channel subunit beta-1/beta-3 | - |
Brain
(35358180)
|
GPS-Palm: 0.93
Deep-Palm: 0.49
|
|
| 121 | - | - | - |
Deep-Palm: 0.02
|
|
| 181 | SWISSPALM | - | - | - |
GPS-Palm: 0.88
Deep-Palm: 0.73
|
| 211 | - | - | - |
GPS-Palm: 0.84
Deep-Palm: 0.02
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
6
Brain tissue (Mass)
Specificity: 1.000
6/56 (10.7%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.