Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| P98194-2 | ATP2C1 | Calcium-transporting ATPase type 2C member … | Homo sapiens (Human) | 888 aa |
Protein Details: P98194-2 (ATP2C1)
Protein Information
| Accession | P98194-2 |
|---|---|
| Protein Names | Calcium-transporting ATPase type 2C member 1 (ATPase 2C1) (EC 7.2.2.10) (ATP-dependent Ca(2+) pump PMR1) (Ca(2+)/Mn(2+)-ATPase 2C1) (Secretory pathway Ca(2+)-transporting ATPase type 1) (SPCA1) |
| Gene Symbol | ATP2C1 |
| Organism | Homo sapiens (Human) |
| Length | 888 aa |
| Isoforms | |
| Related PMIDs | 31251020 33636221 |
| Database Sources | No database sources |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MKVARFQKIP11NGENETMIPV21LTSKKASELP31VSEVASILQA41DLQNGLNKCE
51-10051VSHRRAFHGW61NEFDISEDEP71LWKKYISQFK81NPLIMLLLAS91AVISVLMHQF
101-150101DDAVSITVAI111LIVVTVAFVQ121EYRSEKSLEE131LSKLVPPECH141CVREGKLEHT
151-200151LARDLVPGDT161VCLSVGDRVP171ADLRLFEAVD181LSIDESSLTG191ETTPCSKVTA
201-250201PQPAATNGDL211ASRSNIAFMG221TLVRCGKAKG231VVIGTGENSE241FGEVFKMMQA
251-300251EEAPKTPLQK261SMDLLGKQLS271FYSFGIIGII281MLVGWLLGKD291ILEMFTISVS
301-350301LAVAAIPEGL311PIVVTVTLAL321GVMRMVKKRA331IVKKLPIVET341LGCCNVICSD
351-400351KTGTLTKNEM361TVTHIFTSDG371LHAEVTGVGY381NQFGEVIVDG391DVVHGFYNPA
401-450401VSRIVEAGCV411CNDAVIRNNT421LMGKPTEGAL431IALAMKMGLD441GLQQDYIRKA
451-500451EYPFSSEQKW461MAVKCVHRTQ471QDRPEICFMK481GAYEQVIKYC491TTYQSKGQTL
501-550501TLTQQQRDVY511QQEKARMGSA521GLRVLALASG531PELGQLTFLG541LVGIIDPPRT
551-600551GVKEAVTTLI561ASGVSIKMIT571GDSQETAVAI581ASRLGLYSKT591SQSVSGEEID
601-650601AMDVQQLSQI611VPKVAVFYRA621SPRHKMKIIK631SLQKNGSVVA641MTGDGVNDAV
651-700651ALKAADIGVA661MGQTGTDVCK671EAADMILVDD681DFQTIMSAIE691EGKGIYNNIK
701-750701NFVRFQLSTS711IAALTLISLA721TLMNFPNPLN731AMQILWINII741MDGPPAQSLG
751-800751VEPVDKDVIR761KPPRNWKDSI771LTKNLILKIL781VSSIIIVCGT791LFVFWRELRD
801-850801NVITPRDTTM811TFTCFVFFDM821FNALSSRSQT831KSVFEIGLCS841NRMFCYAVLG
851-888851SIMGQLLVIY861FPPLQKVFQT871ESLSILGLAL881GEEWTAAG
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 49 | Cation-transporting P-type ATPase, N-terminal P-type ATPase, transmembrane domain superfamily | - | - |
Deep-Palm: 0.69
|
|
| 139 | - | - | - |
Deep-Palm: 0.98
|
|
| 141 | - | - | - |
GPS-Palm: 0.90
Deep-Palm: 0.98
|
|
| 162 | - | - | - |
Deep-Palm: 0.98
|
|
| 195 | - | - | - |
Deep-Palm: 0.84
|
|
| 225 | - | - | - |
Deep-Palm: 0.96
|
|
| 343 | - | - | - |
GPS-Palm: 0.90
Deep-Palm: 0.98
|
|
| 344 | - | - | - |
GPS-Palm: 0.92
Deep-Palm: 0.98
|
|
| 348 | - | - | - |
Deep-Palm: 0.97
|
|
| 409 | - | - | - |
Deep-Palm: 0.42
|
|
| 411 | - | - | - |
Deep-Palm: 0.55
|
|
| 465 | - | - | - |
Deep-Palm: 0.13
|
|
| 477 | - | - | - |
Deep-Palm: 0.08
|
|
| 490 | - | - | - |
Deep-Palm: 0.75
|
|
| 669 | - | - | - |
Deep-Palm: 0.89
|
|
| 788 | - | - | - |
Deep-Palm: 0.87
|
|
| 814 | - | - | - |
Deep-Palm: 0.14
|
|
| 839 | - | - | - |
Deep-Palm: 0.87
|
|
| 845 | - | - | - |
Deep-Palm: 0.54
|
|
| 889 | - | - | - |
Deep-Palm: 0.98
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.800
4
LNCaP
Specificity: 0.800
4/4 (100.0%)
1
heart
Specificity: 0.200
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.
Conservation score for cysteine
PhyloP for Cysteine
PhastCons Conservation Scores for Cysteine
TCGA Cysteine Mutation Information
Note: Mutations indicate amino acid changes that may create potential palmitoylation sites.
| Position | Amino Acid Change | Frequency | Type | Function | Cancer Type |
|---|---|---|---|---|---|
| 143 | R → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 195 | C → Vfs*4 | 0.001014 | DEL | Frame Shift Del | BRCA |
| 409 | C → C | 0.002506 | SNP | Silent | COAD |
| 490 | C → Y | 0.001969 | SNP | Missense Mutation | HNSC |
| 760 | R → C | 0.002506 | SNP | Missense Mutation | COAD |
| 814 | C → C | 0.002288 | SNP | Silent | STAD |
| 972 | C → F | 0.001764 | SNP | Missense Mutation | LUAD |