Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q01405 | Sec23a | Protein transport protein Sec23A (SEC23-related … | Mus musculus (Mouse) | 765 aa |
Protein Details: Q01405 (Sec23a)
Protein Information
| Accession | Q01405 |
|---|---|
| Protein Names | Protein transport protein Sec23A (SEC23-related protein A) |
| Gene Symbol | Sec23a |
| Organism | Mus musculus (Mouse) |
| Length | 765 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 29733200 35358180 35477839 37925639 |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MTTYLEFIQQ11NEERDGVRFS21WNVWPSSRLE31ATRMVVPVAA41LFTPLKERPD
51-10051LPPIQYEPVL61CSRTTCRAVL71NPLCQVDYRA81KLWACNFCYQ91RNQFPPTYAG
101-150101ISELNQPAEL111LPQFSSIEYV121VLRGPQMPLI131FLYVVDTCIE141DEDLQALKES
151-200151MQMSLSLLPP161TALVGLITFG171RMVQVHELGC181EGISKSYVFR191GTKDLSAKQL
201-250201QEMLGLSKVP211VTQATRGPQV221QQPPPSNRFL231QPVQKIDMNL241TDLLGELQRD
251-300251PWPVPQGKRP261LRSSGVALSI271AVGLLECTFP281NTGARIMMFI291GGPATQGPGM
301-350301VVGDELKTPI311RSWHDIEKDN321AKYVKKGTKH331FEALANRAAT341TGHVIDIYAC
351-400351ALDQTGLLEM361KCCPNLTGGY371MVMGDSFNTS381LFKQTFQRVF391TKDIHGQFKM
401-450401GFGGTLEIKT411SREIKISGAI421GPCVSLNSKG431PCVSENEIGT441GGTCQWKICG
451-500451LSPTTTLAIY461FEVVNQHNAP471IPQGGRGAVQ481FVTQYQHSSG491QRRIRVTTIA
501-550501RNWADAQTQI511QNIAASFDQE521AAAILMARLA531IYRAETEEGP541DVLRWLDRQL
551-600551IRLCQKFGEY561HKDDPNSFRF571SETFSLYPQF581MFHLRRSPFL591QVFNNSPDES
601-650601SYYRHHFMRQ611DLTQSLIMIQ621PILYAYSFSG631PPEPVLLDSS641SILADRILLM
651-700651DTFFQILIYH661GETIAQWRKS671GYQDMPEYEN681FRHLLQAPVD691DAQEILHSRF
701-750701PMPRYIDTEH711GGSQARFLLS721KVNPSQTHNN731MYAWGQESGA741PILTDDVSLQ
751-765751VFMDHLKKLA761VSSAA
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 61 | - | - | - |
Deep-Palm: 0.93
|
|
| 66 | - | - | - |
Deep-Palm: 0.92
|
|
| 74 | SWISSPALM DBPTM CYSMODDB | Sec23/Sec24 zinc finger |
MLE
(39008777)
Liver
(28526873)
| - |
GPS-Palm: 0.96
Deep-Palm: 0.86
|
| 85 | SWISSPALM DBPTM CYSMODDB | Sec23/Sec24 zinc finger |
Forebrain
(28680068)
| - |
GPS-Palm: 0.87
Deep-Palm: 0.42
|
| 88 | - | - | - |
GPS-Palm: 0.82
Deep-Palm: 0.36
|
|
| 138 | - | - | - |
Deep-Palm: 0.52
|
|
| 180 | - | - | - |
GPS-Palm: 0.78
Deep-Palm: 0.86
|
|
| 277 | - | - | - |
GPS-Palm: 0.83
Deep-Palm: 0.97
|
|
| 350 | - | - | - |
Deep-Palm: 0.65
|
|
| 362 | - | - | - |
Deep-Palm: 0.48
|
|
| 363 | - | - | - |
Deep-Palm: 0.40
|
|
| 423 | - | - | - |
GPS-Palm: 0.77
Deep-Palm: 0.77
|
|
| 432 | - | - | - |
Deep-Palm: 0.44
|
|
| 444 | - | - | - |
Deep-Palm: 0.71
|
|
| 449 | - | - | - |
GPS-Palm: 0.80
Deep-Palm: 0.77
|
|
| 554 | - | - | - |
GPS-Palm: 0.89
Deep-Palm: 0.81
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.500
4
Liver
Specificity: 0.500
4/4 (100.0%)
2
Brain
Specificity: 0.250
2/2 (100.0%)
2
Testis
Specificity: 0.250
2/2 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.