Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q0VD83 | APOBR | Apolipoprotein B receptor (Apolipoprotein B-100 … | Homo sapiens (Human) | 1097 aa |
Protein Details: Q0VD83 (APOBR)
Protein Information
| Accession | Q0VD83 |
|---|---|
| Protein Names | Apolipoprotein B receptor (Apolipoprotein B-100 receptor) (Apolipoprotein B-48 receptor) (Apolipoprotein B48 receptor) (apoB-48R) |
| Gene Symbol | APOBR |
| Organism | Homo sapiens (Human) |
| Length | 1097 aa |
| Isoforms | No isoforms |
| Related PMIDs | 31382980 |
| Database Sources | SwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MDFLRLYLPG11LHQALRGALD21SLGTFVSYLL31GDAVPTVERE41AQAAEELGVV
51-10051AVGKTGKIVE61EEAQEDLEGL71RGSQNEGAGR81LRGPGDDRRH91EVGSSAVEQT
101-150101WGWGDGSSHG111SQAERQDSGA121GETAKAARCQ131EPSAHLEARK141KSKAGSGACQ
151-200151DRSGQAQERQ161ESHEQEVNRE171ERLRSWEQEE181EEEEVRAREP191GMARGAESEW
201-250201TWHGETEGKA211GAVGPKAAGD221NREMEQGVRE231ADAGETEEPG241AEGAGKGEEV
251-300251VVVEKACEST261RAWGTWGPGA271EPEDWGILGR281EEARTTPGRE291EARAILDGEE
301-350301ARTISGGEEA311ETASGGEEAE321TASGGEEAGT331ASGGEEAGIA341SGGEAGTASG
351-400351GEEAGTASGG361EEAGTASGGD371EAWTTSGKEE381ADLLGVRQTE391YGAVPGERLL
401-450401EATGKVWVLE411EEGDEEREAE421VSPFPKQPQV431LGTERTEEAA441ESQTAGREAV
451-500451GGQEAGESFE461GQVDLRGKEA471EMRQDLGIRA481DRARMEELVQ491AEEAQEERGS
501-550501SRDPVAELPS511DGEAEGTADL521EATPEARPEE531ELTGEESEAA541QTSCGLLGVE
551-600551WGGLTHSVTK561GQGPELMGGA571QTPTKQPEER581EAGEVELMGV591LALSKEEQER
601-650601SLEAGPRHAG611SVKPEASEAF621PGAWENRTRK631DMERGNTQED641AADGEQREEE
651-700651ETAGGQTLAA661EAEGDRESEL671SEVPEAGGEG681LTTQDAGCGT691EEGEASVSEN
701-750701QELDGSTGAD711AGPCPSLGEA721YARETEDEEA731EADRTSRRGW741RLQAVAVGLP
751-800751DREDAQTGSV761AAGIMGGDVV771PHISAAGAGE781ALEGVLGQGW791DSKEKEEAAA
801-850801GEHAGGQEFG811LEGSAEEEVT821GRGSQVEAFE831SREGGPWGGR841VEAEESAGAE
851-900851DSCGLDPAGS861QTARAEGMGA871MVEAGGLLEK881WTLLEEEAVG891WQEREQREDS
901-950901EGRCGDYHPE911GEAPRLLDAE921GLMVTGGRRA931EAKETEPESL941EHVRGQEEQP
951-1000951THQAPAEAAP961ESVGEAETAE971AMGSARGGAA981NSWSEAPLPG991SLLDVSVPRS
1001-10501001RVHLSRSSSQ1011RRSRPSFRRT1021PAWEQQEEPP1031APNPPEEELS1041APEQRPLQLE
1051-10971051EPLEPSPLRH1061DGTPVPARRR1071PLGHGFGLAH1081PGMMQELQAR1091LGRPKPQ
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 129 | - | - | - |
Deep-Palm: 0.96
|
|
| 149 | - | - | - |
GPS-Palm: 0.74
Deep-Palm: 0.95
|
|
| 257 | - | - | - |
Deep-Palm: 0.98
|
|
| 544 | - | - | - |
Deep-Palm: 0.97
|
|
| 688 | - | - | - |
Deep-Palm: 0.93
|
|
| 714 | - | - | - |
Deep-Palm: 0.92
|
|
| 853 | - | - | - |
Deep-Palm: 0.97
|
|
| 904 | - | - | - |
Deep-Palm: 0.89
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
1
U937 cell
Specificity: 1.000
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.
Conservation score for cysteine
PhyloP for Cysteine
PhastCons Conservation Scores for Cysteine
TCGA Cysteine Mutation Information
Note: Mutations indicate amino acid changes that may create potential palmitoylation sites.
| Position | Amino Acid Change | Frequency | Type | Function | Cancer Type |
|---|---|---|---|---|---|
| 974 | W → C | 0.001014 | SNP | Missense Mutation | BRCA |
| 974 | W → C | 0.002033 | SNP | Missense Mutation | LUSC |
| 1009 | R → C | 0.010707 | SNP | Missense Mutation | SKCM |