Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q10570 | CPSF1 | Cleavage and polyadenylation specificity factor … | Homo sapiens (Human) | 1443 aa |
Protein Details: Q10570 (CPSF1)
Protein Information
| Accession | Q10570 |
|---|---|
| Protein Names | Cleavage and polyadenylation specificity factor subunit 1 (Cleavage and polyadenylation specificity factor 160 kDa subunit) (CPSF 160 kDa subunit) |
| Gene Symbol | CPSF1 |
| Organism | Homo sapiens (Human) |
| Length | 1443 aa |
| Isoforms | No isoforms |
| Related PMIDs | 24357059 31251020 32944167 |
| Database Sources | SwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MYAVYKQAHP11PTGLEFSMYC21NFFNNSERNL31VVAGTSQLYV41YRLNRDAEAL
51-10051TKNDRSTEGK61AHREKLELAA71SFSFFGNVMS81MASVQLAGAK91RDALLLSFKD
101-150101AKLSVVEYDP111GTHDLKTLSL121HYFEEPELRD131GFVQNVHTPR141VRVDPDGRCA
151-200151AMLVYGTRLV161VLPFRRESLA171EEHEGLVGEG181QRSSFLPSYI191IDVRALDEKL
201-250201LNIIDLQFLH211GYYEPTLLIL221FEPNQTWPGR231VAVRQDTCSI241VAISLNITQK
251-300251VHPVIWSLTS261LPFDCTQALA271VPKPIGGVVV281FAVNSLLYLN291QSVPPYGVAL
301-350301NSLTTGTTAF311PLRTQEGVRI321TLDCAQATFI331SYDKMVISLK341GGEIYVLTLI
351-400351TDGMRSVRAF361HFDKAAASVL371TTSMVTMEPG381YLFLGSRLGN391SLLLKYTEKL
401-450401QEPPASAVRE411AADKEEPPSK421KKRVDATAGW431SAAGKSVPQD441EVDEIEVYGS
451-500451EAQSGTQLAT461YSFEVCDSIL471NIGPCANAAV481GEPAFLSEEF491QNSPEPDLEI
501-550501VVCSGHGKNG511ALSVLQKSIR521PQVVTTFELP531GCYDMWTVIA541PVRKEEEDNP
551-600551KGEGTEQEPS561TTPEADDDGR571RHGFLILSRE581DSTMILQTGQ591EIMELDTSGF
601-650601ATQGPTVFAG611NIGDNRYIVQ621VSPLGIRLLE631GVNQLHFIPV641DLGAPIVQCA
651-700651VADPYVVIMS661AEGHVTMFLL671KSDSYGGRHH681RLALHKPPLH691HQSKVITLCL
701-750701YRDLSGMFTT711ESRLGGARDE721LGGRSGPEAE731GLGSETSPTV741DDEEEMLYGD
751-800751SGSLFSPSKE761EARRSSQPPA771DRDPAPFRAE781PTHWCLLVRE791NGTMEIYQLP
801-850801DWRLVFLVKN811FPVGQRVLVD821SSFGQPTTQG831EARREEATRQ841GELPLVKEVL
851-900851LVALGSRQSR861PYLLVHVDQE871LLIYEAFPHD881SQLGQGNLKV891RFKKVPHNIN
901-950901FREKKPKPSK911KKAEGGGAEE921GAGARGRVAR931FRYFEDIYGY941SGVFICGPSP
951-1000951HWLLVTGRGA961LRLHPMAIDG971PVDSFAPFHN981VNCPRGFLYF991NRQGELRISV
1001-10501001LPAYLSYDAP1011WPVRKIPLRC1021TAHYVAYHVE1031SKVYAVATST1041NTPCARIPRM
1051-11001051TGEEKEFETI1061ERDERYIHPQ1071QEAFSIQLIS1081PVSWEAIPNA1091RIELQEWEHV
1101-11501101TCMKTVSLRS1111EETVSGLKGY1121VAAGTCLMQG1131EEVTCRGRIL1141IMDVIEVVPE
1151-12001151PGQPLTKNKF1161KVLYEKEQKG1171PVTALCHCNG1181HLVSAIGQKI1191FLWSLRASEL
1201-12501201TGMAFIDTQL1211YIHQMISVKN1221FILAADVMKS1231ISLLRYQEES1241KTLSLVSRDA
1251-13001251KPLEVYSVDF1261MVDNAQLGFL1271VSDRDRNLMV1281YMYLPEAKES1291FGGMRLLRRA
1301-13501301DFHVGAHVNT1311FWRTPCRGAT1321EGLSKKSVVW1331ENKHITWFAT1341LDGGIGLLLP
1351-14001351MQEKTYRRLL1361MLQNALTTML1371PHHAGLNPRA1381FRMLHVDRRT1391LQNAVRNVLD
1401-14431401GELLNRYLYL1411STMERSELAK1421KIGTTPDIIL1431DDLLETDRVT1441AHF
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 20 | - | - | - |
Deep-Palm: 0.27
|
|
| 149 | - | - | - |
Deep-Palm: 0.92
|
|
| 238 | - | - | - |
GPS-Palm: 0.72
Deep-Palm: 0.58
|
|
| 265 | - | - | - |
Deep-Palm: 0.67
|
|
| 324 | - | - | - |
Deep-Palm: 0.92
|
|
| 466 | - | - | - |
Deep-Palm: 0.72
|
|
| 475 | - | - | - |
Deep-Palm: 0.70
|
|
| 503 | - | - | - |
Deep-Palm: 0.79
|
|
| 532 | - | - | - |
Deep-Palm: 0.70
|
|
| 649 | - | - | - |
Deep-Palm: 0.29
|
|
| 699 | - | - | - |
GPS-Palm: 0.80
Deep-Palm: 0.83
|
|
| 785 | - | - | - |
Deep-Palm: 0.92
|
|
| 946 | - | - | - |
Deep-Palm: 0.90
|
|
| 983 | - | - | - |
GPS-Palm: 0.70
Deep-Palm: 0.30
|
|
| 1020 | - | - | - |
Deep-Palm: 0.41
|
|
| 1044 | - | - | - |
GPS-Palm: 0.89
Deep-Palm: 0.75
|
|
| 1102 | - | - | - |
Deep-Palm: 0.81
|
|
| 1126 | - | - | - |
Deep-Palm: 0.96
|
|
| 1135 | - | - | - |
Deep-Palm: 0.69
|
|
| 1176 | - | - | - |
Deep-Palm: 0.82
|
|
| 1178 | - | - | - |
Deep-Palm: 0.58
|
|
| 1316 | - | - | - |
GPS-Palm: 0.85
Deep-Palm: 0.64
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.429
3
LNCaP
Specificity: 0.429
3/3 (100.0%)
3
PC3
Specificity: 0.429
3/3 (100.0%)
1
HUVECs
Specificity: 0.143
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.
Conservation score for cysteine
PhyloP for Cysteine
PhastCons Conservation Scores for Cysteine
TCGA Cysteine Mutation Information
Note: Mutations indicate amino acid changes that may create potential palmitoylation sites.
| Position | Amino Acid Change | Frequency | Type | Function | Cancer Type |
|---|---|---|---|---|---|
| 189 | Y → C | 0.001014 | SNP | Missense Mutation | BRCA |
| 355 | R → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 409 | R → C | 0.005435 | SNP | Missense Mutation | ESCA |
| 533 | Y → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 627 | R → C | 0.002033 | SNP | Missense Mutation | LUSC |
| 693 | S → C | 0.002747 | SNP | Missense Mutation | LIHC |
| 785 | C → C | 0.002020 | SNP | Silent | PRAD |
| 811 | F → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 932 | R → C | 0.007299 | SNP | Missense Mutation | READ |
| 932 | R → C | 0.004219 | SNP | Missense Mutation | SARC |
| 1019 | R → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 1046 | R → C | 0.005618 | SNP | Missense Mutation | PAAD |
| 1135 | C → Y | 0.002294 | SNP | Missense Mutation | OV |
| 1256 | Y → C | 0.002288 | SNP | Missense Mutation | STAD |
| 1295 | R → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 1356 | Y → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 1396 | R → C | 0.002545 | SNP | Missense Mutation | GBM |
| 1406 | R → C | 0.001887 | SNP | Missense Mutation | UCEC |