Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q15029-2 | EFTUD2 | 116 kDa U5 small nuclear … | Homo sapiens (Human) | 937 aa |
Protein Details: Q15029-2 (EFTUD2)
Protein Information
| Accession | Q15029-2 |
|---|---|
| Protein Names | 116 kDa U5 small nuclear ribonucleoprotein component (Elongation factor Tu GTP-binding domain-containing protein 2) (SNU114 homolog) (hSNU114) (U5 snRNP-specific protein, 116 kDa) (U5-116 kDa) |
| Gene Symbol | EFTUD2 |
| Organism | Homo sapiens (Human) |
| Length | 937 aa |
| Isoforms | |
| Related PMIDs | 31251020 36430497 |
| Database Sources | No database sources |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MDDDDDDDDV11GDHDDDHPGM21EVVLHEDKKY31YPTAEEVYGP41EVETIVQEED
51-10051TQPLTEPIIK61PVKTKKFTLM71EQTLPVTVYE81MDFLADLMDN91SELIRNVTLC
101-150101GHLHHGKTCF111VDCLIEQTHP121EIRKRYDQDL131CYTDILFTEQ141ERGVGIKSTP
151-200151VTVVLPDTKG161KSYLFNIMDT171PGHVNFSDEV181TAGLRISDGV191VLFIDAAEGV
201-250201MLNTERLIKH211AVQERLAVTV221CINKIDRLIL231ELKLPPTDAY241YKLRHIVDEV
251-300251NGLISMYSTD261ENLILSPLLG271NVCFSSSQYS281ICFTLGSFAK291IYADTFGDIN
301-350301YQEFAKRLWG311DIYFNPKTRK321FTKKAPTSSS331QRSFVEFILE341PLYKILAQVV
351-400351GDVDTSLPRT361LDELGIHLTK371EELKLNIRPL381LRLVCKKFFG391EFTGFVDMCV
401-450401QHIPSPKVGA411KPKIEHTYTG421GVDSDLGEAM431SDCDPDGPLM441CHTTKMYSTD
451-500451DGVQFHAFGR461VLSGTIHAGQ471PVKVLGENYT481LEDEEDSQIC491TVGRLWISVA
501-550501RYHIEVNRVP511AGNWVLIEGV521DQPIVKTATI531TEPRGNEEAQ541IFRPLKFNTT
551-600551SVIKIAVEPV561NPSELPKMLD571GLRKVNKSYP581SLTTKVEESG591EHVILGTGEL
601-650601YLDCVMHDLR611KMYSEIDIKV621ADPVVTFCET631VVETSSLKCF641AETPNKKNKI
651-700651TMIAEPLEKG661LAEDIENEVV671QITWNRKKLG681EFFQTKYDWD691LLAARSIWAF
701-750701GPDATGPNIL711VDDTLPSEVD721KALLGSVKDS731IVQGFQWGTR741EGPLCDELIR
751-800751NVKFKILDAV761VAQEPLHRGG771GQIIPTARRV781VYSAFLMATP791RLMEPYYFVE
801-850801VQAPADCVSA811VYTVLARRRG821HVTQDAPIPG831SPLYTIKAFI841PAIDSFGFET
851-900851DLRTHTQGQA861FSLSVFHHWQ871IVPGDPLDKS881IVIRPLEPQP891APHLAREFMI
901-937901KTRRRKGLSE911DVSISKFFDD921PMLLELAKQD931VVLNYPM
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 135 | - | - | - |
Deep-Palm: 0.62
|
|
| 144 | - | - | - |
Deep-Palm: 0.47
|
|
| 148 | - | - | - |
Deep-Palm: 0.35
|
|
| 166 | - | - | - |
Deep-Palm: 0.53
|
|
| 221 | - | - | - |
GPS-Palm: 0.92
|
|
| 256 | - | - | - |
Deep-Palm: 0.97
|
|
| 308 | - | - | - |
Deep-Palm: 0.92
|
|
| 317 | - | - | - |
Deep-Palm: 0.55
|
|
| 420 | - | - | - |
Deep-Palm: 0.97
|
|
| 434 | - | - | - |
Deep-Palm: 0.56
|
|
| 468 | - | - | - |
Deep-Palm: 0.12
|
|
| 476 | - | - | - |
Deep-Palm: 0.03
|
|
| 525 | - | - | - |
Deep-Palm: 0.89
|
|
| 639 | - | - | - |
Deep-Palm: 0.93
|
|
| 663 | - | - | - |
Deep-Palm: 0.76
|
|
| 674 | - | - | - |
Deep-Palm: 0.71
|
|
| 745 | - | - | - |
GPS-Palm: 0.90
|
|
| 780 | - | - | - |
Deep-Palm: 0.91
|
|
| 842 | - | - | - |
Deep-Palm: 0.84
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.571
4
cerebral cortex
Specificity: 0.571
4/4 (100.0%)
3
LNCaP
Specificity: 0.429
3/3 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.
Conservation score for cysteine
PhyloP for Cysteine
PhastCons Conservation Scores for Cysteine
TCGA Cysteine Mutation Information
Note: Mutations indicate amino acid changes that may create potential palmitoylation sites.
| Position | Amino Acid Change | Frequency | Type | Function | Cancer Type |
|---|---|---|---|---|---|
| 65 | Y → C | 0.001014 | SNP | Missense Mutation | BRCA |
| 220 | R → C | 0.002294 | SNP | Missense Mutation | OV |
| 279 | R → C | 0.001764 | SNP | Missense Mutation | LUAD |
| 413 | R → C | 0.002506 | SNP | Missense Mutation | COAD |
| 413 | R → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 529 | R → C | 0.001969 | SNP | Missense Mutation | HNSC |
| 531 | W → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 537 | Y → C | 0.002288 | SNP | Missense Mutation | STAD |
| 730 | R → C | 0.001014 | SNP | Missense Mutation | BRCA |
| 730 | R → C | 0.002141 | SNP | Missense Mutation | SKCM |
| 730 | R → C | 0.003774 | SNP | Missense Mutation | UCEC |
| 919 | R → C | 0.001014 | SNP | Missense Mutation | BRCA |
| 919 | R → C | 0.003460 | SNP | Missense Mutation | CESC |
| 939 | R → C | 0.002288 | SNP | Missense Mutation | STAD |
| ? | ? → ? | 0.001764 | SNP | Missense Mutation | LUAD |