Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q15029-3 | EFTUD2 | 116 kDa U5 small nuclear … | Homo sapiens (Human) | 962 aa |
Protein Details: Q15029-3 (EFTUD2)
Protein Information
| Accession | Q15029-3 |
|---|---|
| Protein Names | 116 kDa U5 small nuclear ribonucleoprotein component (Elongation factor Tu GTP-binding domain-containing protein 2) (SNU114 homolog) (hSNU114) (U5 snRNP-specific protein, 116 kDa) (U5-116 kDa) |
| Gene Symbol | EFTUD2 |
| Organism | Homo sapiens (Human) |
| Length | 962 aa |
| Isoforms | |
| Related PMIDs | 31251020 36430497 |
| Database Sources | No database sources |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MDTDLYDEFG11NYIGPELDSD21EDDDELGRET31KDLDEMDDDD41DDDDVGDHDD
51-10051DHPGMEVVLH61EDKKYYPTAE71EVYGPEVETI81VQEEDTQPLT91EPIIKPVKTK
101-150101KFTLMEQTLP111VTVYEMDFLA121DLMDNSELIR131NVTLCGHLHH141GKTHPEIRKR
151-200151YDQDLCYTDI161LFTEQERGVG171IKSTPVTVVL181PDTKGKSYLF191NIMDTPGHVN
201-250201FSDEVTAGLR211ISDGVVLFID221AAEGVMLNTE231RLIKHAVQER241LAVTVCINKI
251-300251DRLILELKLP261PTDAYYKLRH271IVDEVNGLIS281MYSTDENLIL291SPLLGNVCFS
301-350301SSQYSICFTL311GSFAKIYADT321FGDINYQEFA331KRLWGDIYFN341PKTRKFTKKA
351-400351PTSSSQRSFV361EFILEPLYKI371LAQVVGDVDT381SLPRTLDELG391IHLTKEELKL
401-450401NIRPLLRLVC411KKFFGEFTGF421VDMCVQHIPS431PKVGAKPKIE441HTYTGGVDSD
451-500451LGEAMSDCDP461DGPLMCHTTK471MYSTDDGVQF481HAFGRVLSGT491IHAGQPVKVL
501-550501GENYTLEDEE511DSQICTVGRL521WISVARYHIE531VNRVPAGNWV541LIEGVDQPIV
551-600551KTATITEPRG561NEEAQIFRPL571KFNTTSVIKI581AVEPVNPSEL591PKMLDGLRKV
601-650601NKSYPSLTTK611VEESGEHVIL621GTGELYLDCV631MHDLRKMYSE641IDIKVADPVV
651-700651TFCETVVETS661SLKCFAETPN671KKNKITMIAE681PLEKGLAEDI691ENEVVQITWN
701-750701RKKLGEFFQT711KYDWDLLAAR721SIWAFGPDAT731GPNILVDDTL741PSEVDKALLG
751-800751SVKDSIVQGF761QWGTREGPLC771DELIRNVKFK781ILDAVVAQEP791LHRGGGQIIP
801-850801TARRVVYSAF811LMATPRLMEP821YYFVEVQAPA831DCVSAVYTVL841ARRRGHVTQD
851-900851APIPGSPLYT861IKAFIPAIDS871FGFETDLRTH881TQGQAFSLSV891FHHWQIVPGD
901-950901PLDKSIVIRP911LEPQPAPHLA921REFMIKTRRR931KGLSEDVSIS941KFFDDPMLLE
951-962951LAKQDVVLNY961PM
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 135 | - | - | - |
Deep-Palm: 0.62
|
|
| 144 | - | - | - |
Deep-Palm: 0.47
|
|
| 148 | - | - | - |
Deep-Palm: 0.35
|
|
| 166 | - | - | - |
Deep-Palm: 0.53
|
|
| 246 | - | - | - |
GPS-Palm: 0.92
|
|
| 256 | - | - | - |
Deep-Palm: 0.97
|
|
| 308 | - | - | - |
Deep-Palm: 0.92
|
|
| 317 | - | - | - |
Deep-Palm: 0.55
|
|
| 420 | - | - | - |
Deep-Palm: 0.97
|
|
| 434 | - | - | - |
Deep-Palm: 0.56
|
|
| 468 | - | - | - |
Deep-Palm: 0.12
|
|
| 476 | - | - | - |
Deep-Palm: 0.03
|
|
| 525 | - | - | - |
Deep-Palm: 0.89
|
|
| 639 | - | - | - |
Deep-Palm: 0.93
|
|
| 663 | - | - | - |
Deep-Palm: 0.76
|
|
| 674 | - | - | - |
Deep-Palm: 0.71
|
|
| 770 | - | - | - |
GPS-Palm: 0.90
|
|
| 780 | - | - | - |
Deep-Palm: 0.91
|
|
| 842 | - | - | - |
Deep-Palm: 0.84
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.571
4
cerebral cortex
Specificity: 0.571
4/4 (100.0%)
3
LNCaP
Specificity: 0.429
3/3 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.
Conservation score for cysteine
PhyloP for Cysteine
PhastCons Conservation Scores for Cysteine
TCGA Cysteine Mutation Information
Note: Mutations indicate amino acid changes that may create potential palmitoylation sites.
| Position | Amino Acid Change | Frequency | Type | Function | Cancer Type |
|---|---|---|---|---|---|
| 65 | Y → C | 0.001014 | SNP | Missense Mutation | BRCA |
| 220 | R → C | 0.002294 | SNP | Missense Mutation | OV |
| 279 | R → C | 0.001764 | SNP | Missense Mutation | LUAD |
| 413 | R → C | 0.002506 | SNP | Missense Mutation | COAD |
| 413 | R → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 529 | R → C | 0.001969 | SNP | Missense Mutation | HNSC |
| 531 | W → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 537 | Y → C | 0.002288 | SNP | Missense Mutation | STAD |
| 730 | R → C | 0.001014 | SNP | Missense Mutation | BRCA |
| 730 | R → C | 0.002141 | SNP | Missense Mutation | SKCM |
| 730 | R → C | 0.003774 | SNP | Missense Mutation | UCEC |
| 919 | R → C | 0.001014 | SNP | Missense Mutation | BRCA |
| 919 | R → C | 0.003460 | SNP | Missense Mutation | CESC |
| 939 | R → C | 0.002288 | SNP | Missense Mutation | STAD |
| ? | ? → ? | 0.001764 | SNP | Missense Mutation | LUAD |