Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q3TXS7 | Psmd1 | 26S proteasome non-ATPase regulatory subunit … | Mus musculus (Mouse) | 953 aa |
Protein Details: Q3TXS7 (Psmd1)
Protein Information
| Accession | Q3TXS7 |
|---|---|
| Protein Names | 26S proteasome non-ATPase regulatory subunit 1 (26S proteasome regulatory subunit RPN2) (26S proteasome regulatory subunit S1) |
| Gene Symbol | Psmd1 |
| Organism | Mus musculus (Mouse) |
| Length | 953 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 29733200 34884899 35358180 35477839 37925639 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MITSAAGIIS11LLDEEEPQLK21EFALHKLNAV31VNDFWAEISE41SVDKIEVLYE
51-10051DEGFRSRQFA61ALVASKVFYH71LGAFEESLNY81ALGAGDLFNV91NDNSEYVETI
101-150101IAKCIDHYTK111QCVENADLPE121GEKKPIDQRL131EGIVNKMFQR141CLDDHKYKQA
151-200151IGIALETRRL161DVFEKTILES171NDVPGMLAYS181LKLCMSLMQN191KQFRNKVLRV
201-250201LVKIYMNLEK211PDFINVCQCL221IFLDDPQAVS231DILEKLVKED241NLLMAYQICF
251-300251DLYESASQQF261LSSVIQNLRT271VGTPIASVPG281STNTGTVPGS291EKDSDPMETE
301-350301EKTASAVAGK311TPDASPEPKD321QTLKMIKILS331GEMAIELHLQ341FLIRNNNTDL
351-400351MILKNTKDAV361RNSVCHTATV371IANSFMHCGT381TSDQFLRDNL391EWLARATNWA
401-450401KFTATASLGV411IHKGHEKEAL421QLMATYLPKD431TSPGSAYQEG441GGLYALGLIH
451-500451ANHGGDIIDY461LLNQLKNASN471DIVRHGGSLG481LGLAAMGTAR491QDVYDLLKTN
501-550501LYQDDAVTGE511AAGLALGLVM521LGSKNAQAIE531DMVGYAQETQ541HEKILRGLAV
551-600551GIALVMYGRM561EEADALIESL571CRDKDPILRR581SGMYTVAMAY591CGSGNNKAIR
601-650601RLLHVAVSDV611NDDVRRAAVE621SLGFILFRTP631EQCPSVVSLL641SESYNPHVRY
651-700651GAAMALGICC661AGTGNKEAIN671LLEPMTNDPV681NYVRQGALIA691SALIMIQQTE
701-750701ITCPKVNQFR711QLYSKVINDK721HDDVMAKFGA731ILAQGILDAG741GHNVTISLQS
751-800751RTGHTHMPSV761VGVLVFTQFW771FWFPLSHFLS781LAYTPTCVIG791LNKDLKMPKV
801-850801QYKSNCKPST811FAYPAPLEVP821KEKEKEKVST831AVLSITAKAK841KKEKEKEKKE
851-900851EEKMEVDEAE861KKEEKEKKKE871PEPNFQLLDN881PARVMPAQLK891VLSMTETCRY
901-950901QPFKPLSIGG911IIILKDTSED921VEELVEPVAA931HGPKIEEEEQ941EPEPPEPFEY
951-953951IDD
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 104 | - | - | - |
Deep-Palm: 0.04
|
|
| 112 | - | - |
Brain
(35358180)
|
Deep-Palm: 0.61
|
|
| 141 | - | - | - |
Deep-Palm: 0.81
|
|
| 184 | SWISSPALM DBPTM CYSMODDB | 26S proteasome subunit RPN2 N-terminal domain |
Liver
(28526873)
| - |
GPS-Palm: 0.94
Deep-Palm: 0.86
|
| 217 | - | - | - |
Deep-Palm: 0.46
|
|
| 219 | - | - | - |
Deep-Palm: 0.66
|
|
| 249 | - | - | - |
Deep-Palm: 0.79
|
|
| 365 | - | - | - |
Deep-Palm: 0.56
|
|
| 378 | - | - | - |
Deep-Palm: 0.46
|
|
| 571 | SWISSPALM DBPTM CYSMODDB | - |
Liver
(28526873)
| - |
Deep-Palm: 0.95
|
| 591 | - | - | - |
Deep-Palm: 0.96
|
|
| 633 | SWISSPALM DBPTM CYSMODDB | HEAT repeats |
Liver
(28526873)
|
Liver
(34884899)
Brain
(35358180)
|
Deep-Palm: 0.96
|
| 659 | - | - | - |
GPS-Palm: 0.94
Deep-Palm: 0.95
|
|
| 660 | - | - | - |
Deep-Palm: 0.97
|
|
| 703 | - | - | - |
Deep-Palm: 0.62
|
|
| 787 | - | - | - |
Deep-Palm: 0.87
|
|
| 806 | - | - | - |
Deep-Palm: 0.73
|
|
| 898 | - | - | - |
Deep-Palm: 0.79
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.556
5
Liver
Specificity: 0.192
5/5 (100.0%)
2
Brain
Specificity: 0.077
2/2 (100.0%)
2
Testis
Specificity: 0.077
2/2 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.706
12
Brain tissue (Mass)
Specificity: 0.462
12/56 (21.4%)
5
Macrophage Raw 264.7 (Mass)
Specificity: 0.192
5/10 (50.0%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.