Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q4VBD2 | Tapt1 | Transmembrane anterior posterior transformation protein … | Mus musculus (Mouse) | 564 aa |
Protein Details: Q4VBD2 (Tapt1)
Protein Information
| Accession | Q4VBD2 |
|---|---|
| Protein Names | Transmembrane anterior posterior transformation protein 1 |
| Gene Symbol | Tapt1 |
| Organism | Mus musculus (Mouse) |
| Length | 564 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 29217618 29733200 31772009 34884899 35477839 37925639 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MAGVCDAAAP11GEGGGGGADG21PERTGRGEAE31QPGGGGHGPA41PQHTETLGFY
51-10051ESDRRREKRR61GRAELSLLRF71LSAELTRGYF81LEHNEAKYTE91RRERVYTCMR
101-150101IPRELEKLMF111FGIFLCLDAF121LYVFTLLPLR131VFLALFRLLT141LPCYGLRDRR
151-200151LLQPAQVCDI161LKGVILVICY171FMMHYVDYSM181MYHLIRGQSV191IKLYIIYNML
201-250201EVADRLFSSF211GQDILDALYW221TATEPKERKR231AHIGVIPHFF241MAVLYVFLHA
251-300251ILIMVQATTL261NVAFNSHNKS271LLTIMMSNNF281VEIKGSVFKK291FEKNNLFQMS
301-350301NSDIKERFTN311YVLLLIVCLR321NMEQFSWNPD331HLWVLFPDVC341MVIASEIAVD
351-400351IVKHAFITKF361NDITADVYSE371YRASLAFDLV381SSRQKNAYTD391YSDSVARRMG
401-450401FIPLPLAVLL411IRVVTSSIKV421QGILSYACVI431LFYFGLISLK441ILNSIVLLGK
451-500451SCQYVKEAKM461EEKLFNPPPA471STPGKPSSKS481QSKGKPSQGL491STEENLSASV
501-550501TSQPGHQKEN511VIPLLVTSNS521DQFLTTPDGD531EKDITQENSE541LKHRSSKKDL
551-564551LEIDRFTICG561NRID
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 5 | - | - |
Liver
(37925639)
Brain
(35358180)
|
GPS-Palm: 0.90
Deep-Palm: 0.04
|
|
| 98 | - | - | - |
GPS-Palm: 0.91
Deep-Palm: 0.74
|
|
| 116 | - | - | - |
Deep-Palm: 0.93
|
|
| 143 | SWISSPALM DBPTM CYSMODDB | - |
Liver
(28526873)
| - |
GPS-Palm: 0.96
Deep-Palm: 0.98
|
| 158 | - | - | - |
Deep-Palm: 0.77
|
|
| 169 | - | - | - |
Deep-Palm: 0.01
|
|
| 318 | - | - | - |
GPS-Palm: 0.91
Deep-Palm: 0.39
|
|
| 340 | - | - | - |
Deep-Palm: 0.07
|
|
| 428 | - | - | - |
Deep-Palm: 0.86
|
|
| 452 | - | - | - |
Deep-Palm: 0.93
|
|
| 559 | - | - | - |
GPS-Palm: 0.92
Deep-Palm: 0.03
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.545
6
Liver
Specificity: 0.316
6/6 (100.0%)
2
Testis
Specificity: 0.105
2/2 (100.0%)
1
Raw 264.7
Specificity: 0.053
1/1 (100.0%)
1
Brain
Specificity: 0.053
1/1 (100.0%)
1
NSC
Specificity: 0.053
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.625
5
Liver tissue (Mass)
Specificity: 0.263
5/8 (62.5%)
3
Brain tissue (Mass)
Specificity: 0.158
3/56 (5.4%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.