Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q5GH67 | Xkr4 | XK-related protein 4 [Cleaved into: … | Mus musculus (Mouse) | 647 aa |
Protein Details: Q5GH67 (Xkr4)
Protein Information
| Accession | Q5GH67 |
|---|---|
| Protein Names | XK-related protein 4 [Cleaved into: XK-related protein 4, processed form] |
| Gene Symbol | Xkr4 |
| Organism | Mus musculus (Mouse) |
| Length | 647 aa |
| Isoforms | No isoforms |
| Related PMIDs | 35358180 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MAAKSDGRLK11MKKSSDVAFT21PLQNSDNSGS31VQGLAPGLPS41GSGAEDTEAA
51-10051GGGCCPDGGG61CSRCCCCCAG71SGGSAGSGGS81GGGGRGSGAG91SAALCLRLGR
101-150101EQRRYSLWDC111LWILAAVAVY121FADVGTDIWL131AVDYYLRGQR141WWFGLTLFFV
151-200151VLGSLSVQVF161SFRWFVHDFS171TEDSSTTTTS181SCQQPGADCK191TVVSSGSAAG
201-250201EGEVRPSTPQ211RQASNASKSN221IAATNSGSNS231NGATRTSGKH241RSASCSFCIW
251-300251LLQSLIHILQ261LGQIWRYLHT271IYLGIRSRQS281GESGRWRFYW291KMVYEYADVS
301-350301MLHLLATFLE311SAPQLVLQLC321IIVQTHSLQA331LQGFTAAASL341VSLAWALASY
351-400351QKALRDSRDD361KKPISYMAVI371IQFCWHFFTI381AARVITFALF391ASVFQLYFGI
401-450401FIVLHWCIMT411FWIVHCETEF421CITKWEEIVF431DMVVGIIYIF441SWFNVKEGRT
451-500451RCRLFIYYFV461ILLENTALSA471LWYLYKAPQI481ADAFAIPALC491VVFSSFLTGV
501-550501VFMLMYYAFF511HPNGPRFGQS521PSCACDDPAT531AFSLPPEVAT541STLRSISNNR
551-600551SVASDRDQKF561AERDGCVPVF571QVRPTAPPTP581SSRPPRIEES591VIKIDLFRNR
601-647601YPAWERHVLD611RSLRKAILAF621ECSPSPPRLQ631YKDDALIQER641LEYETTL
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 54 | - | - | - |
Deep-Palm: 0.49
|
|
| 55 | - | - | - |
Deep-Palm: 0.48
|
|
| 61 | - | - | - |
Deep-Palm: 0.22
|
|
| 64 | - | - | - |
Deep-Palm: 0.12
|
|
| 65 | - | - | - |
Deep-Palm: 0.10
|
|
| 66 | - | - | - |
Deep-Palm: 0.10
|
|
| 67 | - | - | - |
Deep-Palm: 0.12
|
|
| 68 | - | - | - |
Deep-Palm: 0.11
|
|
| 95 | SWISSPALM DBPTM CYSMODDB | - |
Forebrain
(28680068)
|
Brain
(35358180)
|
GPS-Palm: 0.96
Deep-Palm: 0.98
|
| 110 | - | - | - |
Deep-Palm: 0.93
|
|
| 182 | - | - | - |
Deep-Palm: 0.21
|
|
| 189 | - | - | - |
Deep-Palm: 0.78
|
|
| 245 | - | - | - |
Deep-Palm: 0.69
|
|
| 248 | - | - | - |
Deep-Palm: 0.84
|
|
| 320 | - | - | - |
Deep-Palm: 0.86
|
|
| 374 | - | - | - |
Deep-Palm: 0.06
|
|
| 407 | - | - | - |
Deep-Palm: 0.02
|
|
| 416 | - | - | - |
Deep-Palm: 0.01
|
|
| 421 | - | - | - |
Deep-Palm: 0.02
|
|
| 452 | - | - | - |
Deep-Palm: 0.30
|
|
| 490 | - | - | - |
Deep-Palm: 0.61
|
|
| 523 | SWISSPALM DBPTM CYSMODDB | - |
Forebrain
(28680068)
| - |
Deep-Palm: 0.56
|
| 525 | - | - | - |
Deep-Palm: 0.67
|
|
| 566 | - | - | - |
Deep-Palm: 0.91
|
|
| 622 | - | - | - |
GPS-Palm: 0.95
Deep-Palm: 0.85
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
1
Brain
Specificity: 0.250
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
3
Brain tissue (Mass)
Specificity: 0.750
3/56 (5.4%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.