Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q5JYX0 | CDC42 | Cell division control protein 42 … | Homo sapiens (Human) | 136 aa |
Protein Details: Q5JYX0 (CDC42)
Protein Information
| Accession | Q5JYX0 |
|---|---|
| Protein Names | Cell division control protein 42 homolog |
| Gene Symbol | CDC42 |
| Organism | Homo sapiens (Human) |
| Length | 136 aa |
| Isoforms | No isoforms |
| Related PMIDs | 26876311 31251020 36430497 31251020 (mass) 32651440 (mass) 36430497 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MQTIKCVVVG11DGAVGKTCLL21ISYTTNKFPS31EYVPTVFDNY41AVTVMIGGEP
51-10051YTLGLFDTAG61QEDYDRLRPL71SYPQTDVFLV81CFSVVSPSSF91ENVKEKWVPE
101-136101ITHHCPKTPF111LLVGTQIDLR121DDPSTIEKLA131KNKQKP
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 6 | SWISSPALM DBPTM CYSMODDB | Ras family P-loop containing nucleoside triphosphate hydrolase Small GTPase | - |
cerebral cortex
(36430497)
|
GPS-Palm: 0.90
Deep-Palm: 0.08
|
| 18 | P-loop containing nucleoside triphosphate hydrolase Transforming protein P21 ras signature Small GTPase Small GTPase Rho | - |
cerebral cortex
(36430497)
|
GPS-Palm: 0.90
Deep-Palm: 0.97
|
|
| 81 | - | - |
Unknown
(32651440)
|
Deep-Palm: 0.95
|
|
| 105 | - | - | - |
Deep-Palm: 0.96
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.571
4
cerebral cortex
Specificity: 0.400
4/4 (100.0%)
2
LNCaP
Specificity: 0.200
2/2 (100.0%)
1
frontal cortex
Specificity: 0.100
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
3
Cerebral Cortex (Mass)
Specificity: 0.300
3/4 (75.0%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.