Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q5ND28 | Scarf1 | Scavenger receptor class F member … | Mus musculus (Mouse) | 820 aa |
Protein Details: Q5ND28 (Scarf1)
Protein Information
| Accession | Q5ND28 |
|---|---|
| Protein Names | Scavenger receptor class F member 1 (Acetyl LDL receptor) (Scavenger receptor expressed by endothelial cells 1 protein) (SREC-I) |
| Gene Symbol | Scarf1 |
| Organism | Mus musculus (Mouse) |
| Length | 820 aa |
| Isoforms | No isoforms |
| Related PMIDs | 35477839 |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MLAAMGLELV11FSLLLLWTQG21TQGSTLDPAG31QHVCKGSSPS41ELQCCPGWRQ
51-10051KDQECTIPIC61EGPDACRKEE71VCVKPGLCRC81KPGFFGAQCS91SRCPGQYWGH
101-150101DCRETCPCHP111RGQCEPATGD121CQCQPNYWGR131LCEFPCTCGP141HGQCDPKTGL
151-200151CHCDPGWWSP161TCRRPCQCNP171ASRCDQATGT181CVCPPGWWGR191RCSFSCNCHT
201-250201SPCMQDSGRC211VCLPGWWGPE221CSRKCQCVRG231QCSVTSGHCS241CPPGFHGIRC
251-300251ELPCNPGHYG261AQCKESCGHC271ELNATCSPVT281GNCESCKPGW291NGTQCKQPCP
301-350301AGTFGERCTG311QCPRCRLGEP321CQAETGHCQH331CDPGWLGHRC341ENPCPLGTFG
351-400351KGCSSTCPAC361AQGTCDAVTG371ECVCSAGYWG381TSCNSSCPAG391FHGNNCSMPC
401-450401QCPEGLCHPV411SGTCQLGRHG421KNALIVGILV431PLLLLLMGIV441CCAYCCSGTR
451-500451LDPKDRPERN461GAAFFRMKQQ471VWGALTNLGS481ALPCGSLSNY491KLPWVTVSHH
501-550501DPEVPFNHSF511IEPPSAGWAS521DDSFSSDPDS531GEEDEAHAYF541VPPREEMVPM
551-600551AQEESPEASL561PGGSFPPPED571ASTPFPIPRT581SSLARAKRPS591VSFAEGTKFA
601-650601PQNGRSSGDL611SSPIRKPKRL621SRGAQPRPEG631QEAEESTGPE641QVNTEEDAPT
651-700651ATSSGDPATS661HGQLPPGSQM671VAECAETTDG681GIQESSGSVA691TIYMLAGTPQ
701-750701KPEGPVWSVF711RRLGNYQKDQ721MDPKVKSAIP731KPLRRSLGRN741QASAGSAPGA
751-800751VLSQAMESTA761VRPEETPRGL771GDGIESSGTV781QEPDAGGSSL791EQDSQKQAEE
801-820801KEQEEPLYEN811VVPMSVPPQH
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 34 | - | - | - |
Deep-Palm: 0.38
|
|
| 44 | - | - | - |
Deep-Palm: 0.07
|
|
| 45 | - | - | - |
Deep-Palm: 0.04
|
|
| 55 | - | - | - |
Deep-Palm: 0.08
|
|
| 60 | - | - | - |
Deep-Palm: 0.12
|
|
| 66 | - | - | - |
Deep-Palm: 0.07
|
|
| 72 | - | - | - |
Deep-Palm: 0.28
|
|
| 78 | - | - | - |
Deep-Palm: 0.31
|
|
| 80 | - | - | - |
Deep-Palm: 0.29
|
|
| 89 | - | - | - |
Deep-Palm: 0.08
|
|
| 93 | - | - | - |
Deep-Palm: 0.03
|
|
| 102 | - | - | - |
Deep-Palm: 0.02
|
|
| 106 | - | - | - |
Deep-Palm: 0.02
|
|
| 108 | - | - | - |
Deep-Palm: 0.02
|
|
| 114 | - | - | - |
Deep-Palm: 0.02
|
|
| 121 | - | - | - |
Deep-Palm: 0.03
|
|
| 123 | - | - | - |
Deep-Palm: 0.03
|
|
| 132 | - | - | - |
Deep-Palm: 0.03
|
|
| 136 | - | - | - |
Deep-Palm: 0.03
|
|
| 138 | - | - | - |
Deep-Palm: 0.03
|
|
| 144 | - | - | - |
Deep-Palm: 0.02
|
|
| 151 | - | - | - |
Deep-Palm: 0.02
|
|
| 153 | - | - | - |
Deep-Palm: 0.02
|
|
| 162 | - | - | - |
Deep-Palm: 0.02
|
|
| 166 | - | - | - |
Deep-Palm: 0.02
|
|
| 168 | - | - | - |
Deep-Palm: 0.02
|
|
| 174 | - | - | - |
Deep-Palm: 0.02
|
|
| 181 | - | - | - |
Deep-Palm: 0.02
|
|
| 183 | - | - | - |
Deep-Palm: 0.02
|
|
| 192 | - | - | - |
Deep-Palm: 0.01
|
|
| 196 | - | - | - |
Deep-Palm: 0.02
|
|
| 198 | - | - | - |
Deep-Palm: 0.02
|
|
| 203 | - | - | - |
Deep-Palm: 0.01
|
|
| 210 | - | - | - |
Deep-Palm: 0.01
|
|
| 212 | - | - | - |
Deep-Palm: 0.02
|
|
| 221 | - | - | - |
Deep-Palm: 0.03
|
|
| 225 | - | - | - |
Deep-Palm: 0.02
|
|
| 227 | - | - | - |
Deep-Palm: 0.02
|
|
| 232 | - | - | - |
Deep-Palm: 0.02
|
|
| 239 | - | - | - |
Deep-Palm: 0.02
|
|
| 241 | - | - | - |
Deep-Palm: 0.02
|
|
| 250 | - | - | - |
Deep-Palm: 0.03
|
|
| 254 | - | - | - |
Deep-Palm: 0.03
|
|
| 263 | - | - | - |
Deep-Palm: 0.02
|
|
| 267 | - | - | - |
Deep-Palm: 0.03
|
|
| 270 | - | - | - |
Deep-Palm: 0.02
|
|
| 276 | - | - | - |
Deep-Palm: 0.02
|
|
| 283 | - | - | - |
Deep-Palm: 0.02
|
|
| 286 | - | - | - |
Deep-Palm: 0.02
|
|
| 295 | - | - | - |
Deep-Palm: 0.03
|
|
| 299 | - | - | - |
Deep-Palm: 0.03
|
|
| 308 | - | - | - |
Deep-Palm: 0.07
|
|
| 312 | - | - | - |
Deep-Palm: 0.12
|
|
| 315 | - | - | - |
Deep-Palm: 0.06
|
|
| 321 | - | - | - |
Deep-Palm: 0.03
|
|
| 328 | - | - | - |
Deep-Palm: 0.02
|
|
| 331 | - | - | - |
Deep-Palm: 0.02
|
|
| 340 | - | - | - |
Deep-Palm: 0.02
|
|
| 344 | - | - | - |
Deep-Palm: 0.04
|
|
| 353 | - | - | - |
Deep-Palm: 0.05
|
|
| 357 | - | - | - |
Deep-Palm: 0.08
|
|
| 360 | - | - | - |
Deep-Palm: 0.06
|
|
| 365 | - | - | - |
Deep-Palm: 0.03
|
|
| 372 | - | - | - |
Deep-Palm: 0.02
|
|
| 374 | - | - | - |
Deep-Palm: 0.03
|
|
| 383 | - | - | - |
Deep-Palm: 0.02
|
|
| 387 | - | - | - |
Deep-Palm: 0.02
|
|
| 396 | - | - | - |
Deep-Palm: 0.02
|
|
| 400 | - | - | - |
Deep-Palm: 0.03
|
|
| 402 | - | - | - |
Deep-Palm: 0.04
|
|
| 407 | - | - | - |
Deep-Palm: 0.04
|
|
| 414 | - | - | - |
Deep-Palm: 0.63
|
|
| 441 | - | - | - |
GPS-Palm: 0.93
Deep-Palm: 0.97
|
|
| 442 | - | - | - |
GPS-Palm: 0.90
Deep-Palm: 0.97
|
|
| 445 | - | - | - |
Deep-Palm: 0.98
|
|
| 446 | - | - | - |
Deep-Palm: 0.97
|
|
| 484 | SWISSPALM DBPTM CYSMODDB | - |
Forebrain
(28680068)
| - |
GPS-Palm: 0.90
Deep-Palm: 0.93
|
| 674 | - | - | - |
Deep-Palm: 0.77
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
1
Testis
Specificity: 1.000
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.