Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q5T4K2 | SLC39A1 | Solute carrier family 39 member … | Homo sapiens (Human) | 206 aa |
Protein Details: Q5T4K2 (SLC39A1)
Protein Information
| Accession | Q5T4K2 |
|---|---|
| Protein Names | Solute carrier family 39 member 1 |
| Gene Symbol | SLC39A1 |
| Organism | Homo sapiens (Human) |
| Length | 206 aa |
| Isoforms | No isoforms |
| Related PMIDs | 31251020 32944167 |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MGPWGEPELL11VWRPEAVASE21PPVPVGLEVK31LGALVLLLVL41TLLCSLVPIC
51-10051VLRRPGANHE61GSASRQKALS71LVSCFAGGVF81LATCLLDLLP91DYLAAIDEAL
101-150101AALHVTLQFP111LQEFILAMGF121FLVLVMEQIT131LAYKEQSGPS141PLEETRALLG
151-200151TVNGGPQHWH161DGPGVPQASG171APATPSALRA181CVLVFSLALH191SVFEGLAVGL
201-206201QRDRAR
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 44 | SWISSPALM DBPTM CYSMODDB | - | - | - |
GPS-Palm: 0.89
Deep-Palm: 0.98
|
| 50 | SWISSPALM DBPTM CYSMODDB | - | - | - |
GPS-Palm: 0.94
Deep-Palm: 0.98
|
| 74 | - | - | - |
GPS-Palm: 0.83
Deep-Palm: 0.93
|
|
| 84 | - | - | - |
Deep-Palm: 0.93
|
|
| 181 | - | - | - |
GPS-Palm: 0.79
Deep-Palm: 0.96
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.750
3
PC3
Specificity: 0.750
3/3 (100.0%)
1
LNCaP
Specificity: 0.250
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.
TCGA Cysteine Mutation Information
Note: Mutations indicate amino acid changes that may create potential palmitoylation sites.
| Position | Amino Acid Change | Frequency | Type | Function | Cancer Type |
|---|---|---|---|---|---|
| 179 | R → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 248 | C → Y | 0.002288 | SNP | Missense Mutation | STAD |
| 248 | C → S | 0.002427 | SNP | Missense Mutation | BLCA |