Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q5YD48 | A1cf | APOBEC1 complementation factor (APOBEC1-stimulating protein) | Mus musculus (Mouse) | 595 aa |
Protein Details: Q5YD48 (A1cf)
Protein Information
| Accession | Q5YD48 |
|---|---|
| Protein Names | APOBEC1 complementation factor (APOBEC1-stimulating protein) |
| Gene Symbol | A1cf |
| Organism | Mus musculus (Mouse) |
| Length | 595 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 37925639 |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MESNHKSGDG11LSGTQKEAAL21RALVQRTGYS31LVQENGQRKY41GGPPPGWDST
51-10051PPERGCEIFI61GKLPRDLFED71ELIPLCEKIG81KIYEMRLMMD91FNGNNRGYAF
101-150101VTFSNKQEAK111NAIKQLNNYE121IRTGRLLGVC131ASVDNCRLFV141GGIPKTKKRE
151-200151EILSEMKKVT161EGVVDVIVYP171SAADKTKNRG181FAFVEYESHR191AAAMARRRLL
201-250201PGRIQLWGHP211IAVDWAEPEV221EVDEDTMSSV231KILYVRNLML241STSEEMIEKE
251-300251FNSIKPGAVE261RVKKIRDYAF271VHFSNREDAV281EAMKALNGKV291LDGSPIEVTL
301-350301AKPVDKDSYV311RYTRGTGGRN321TMLQGEYTYP331LSHVYDPTTT341YLGAPVFYTP
351-400351QAYAAIPSLH361FPATKGHLSN371RALIRTPSVR381EIYMNVPVGA391AGVRGLGGRG
401-450401YLAYTGLGRG411YHVKGDKRED421KLYDLLPGME431LTPMNTVSLK441PQGIKLAPQI
451-500451LEEICQKNNW461GQPVYQLHSA471IGQDQRQLFL481YKVTIPALAS491QNPAIHPFIP
501-550501PKLSAYVDEA511KRYAAEHTLQ521TLGIPTEGGD531AGTTAPTATS541ATVFPGYAVP
551-595551SATAPVSTAQ561LKQAVTLGQD571LAAYTTYEVY581PTFALTTRGD591AYGTF
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 56 | SWISSPALM DBPTM CYSMODDB | - |
liver
(26165157)
| - |
Deep-Palm: 0.82
|
| 76 | - | - | - |
Deep-Palm: 0.93
|
|
| 130 | - | - | - |
GPS-Palm: 0.93
Deep-Palm: 0.86
|
|
| 136 | - | - | - |
Deep-Palm: 0.97
|
|
| 455 | SWISSPALM DBPTM CYSMODDB | double strand RNA binding domain from DEAD END PROTEIN 1 |
Liver
(28526873)
| - |
Deep-Palm: 0.93
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
3
Liver
Specificity: 1.000
3/3 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.