Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q60930 | Vdac2 | Non-selective voltage-gated ion channel VDAC2 … | Mus musculus (Mouse) | 295 aa |
Protein Details: Q60930 (Vdac2)
Protein Information
| Accession | Q60930 |
|---|---|
| Protein Names | Non-selective voltage-gated ion channel VDAC2 (VDAC-2) (mVDAC2) (Outer mitochondrial membrane protein porin 2) (Voltage-dependent anion-selective channel protein 6) (VDAC-6) (mVDAC6) |
| Gene Symbol | Vdac2 |
| Organism | Mus musculus (Mouse) |
| Length | 295 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 29575903 29733200 31311849 34200797 34884899 35358180 35477839 37925639 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MAECCVPVCP11RPMCIPPPYA21DLGKAARDIF31NKGFGFGLVK41LDVKTKSCSG
51-10051VEFSTSGSSN61TDTGKVSGTL71ETKYKWCEYG81LTFTEKWNTD91NTLGTEIAIE
101-150101DQICQGLKLT111FDTTFSPNTG121KKSGKIKSAY131KRECINLGCD141VDFDFAGPAI
151-200151HGSAVFGYEG161WLAGYQMTFD171SAKSKLTRSN181FAVGYRTGDF191QLHTNVNNGT
201-250201EFGGSIYQKV211CEDFDTSVNL221AWTSGTNCTR231FGIAAKYQLD241PTASISAKVN
251-295251NSSLIGVGYT261QTLRPGVKLT271LSALVDGKSF281NAGGHKLGLA291LELEA
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 4 | - |
brain
(39008777)
|
Liver
(37925639)
Brain
(35358180)
Brain
(31311849)
|
GPS-Palm: 0.96
Deep-Palm: 0.01
|
|
| 5 | - |
brain
(39008777)
|
Liver
(37925639)
Brain
(35358180)
Brain
(31311849)
|
GPS-Palm: 0.94
Deep-Palm: 0.01
|
|
| 9 | SWISSPALM DBPTM CYSMODDB | - |
Forebrain
(28680068)
brain
(39008777)
|
Liver
(37925639)
Brain
(35358180)
Brain
(31311849)
|
Deep-Palm: 0.02
|
| 14 | Porin domain superfamily |
brain
(39008777)
|
Brain
(35358180)
Brain
(31311849)
|
Deep-Palm: 0.33
|
|
| 48 | SWISSPALM DBPTM CYSMODDB | Eukaryotic porin/Tom40 Eukaryotic porin Porin domain superfamily |
Brain
(31311849)
Liver
(28526873)
|
Brain
(35358180)
Brain
(31311849)
|
Deep-Palm: 0.96
|
| 77 | SWISSPALM DBPTM CYSMODDB | Eukaryotic porin |
Brain
(31311849)
Liver
(28526873)
|
Brain
(35358180)
Brain
(31311849)
|
Deep-Palm: 0.88
|
| 104 | SWISSPALM DBPTM CYSMODDB | Eukaryotic porin |
Brain
(31311849)
Forebrain
(28680068)
brain
(39008777)
Liver
(28526873)
|
Liver
(34884899)
Brain
(35358180)
Brain
(31311849)
|
Deep-Palm: 0.92
|
| 134 | - | - | - |
Deep-Palm: 0.78
|
|
| 139 | - | - | - |
Deep-Palm: 0.69
|
|
| 211 | Eukaryotic porin |
Brain
(34200797)
|
Brain
(31311849)
|
Deep-Palm: 0.59
|
|
| 228 | Eukaryotic porin |
Brain
(34200797)
|
Brain
(35358180)
Brain
(31311849)
|
GPS-Palm: 0.95
Deep-Palm: 0.88
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.400
6
Liver
Specificity: 0.094
6/6 (100.0%)
5
Brain
Specificity: 0.078
5/5 (100.0%)
2
Raw 264.7
Specificity: 0.031
2/2 (100.0%)
2
Testis
Specificity: 0.031
2/2 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.837
41
Brain tissue (Mass)
Specificity: 0.641
41/56 (73.2%)
8
Liver tissue (Mass)
Specificity: 0.125
8/8 (100.0%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.