Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q61656 | Ddx5 | Probable ATP-dependent RNA helicase DDX5 … | Mus musculus (Mouse) | 614 aa |
Protein Details: Q61656 (Ddx5)
Protein Information
| Accession | Q61656 |
|---|---|
| Protein Names | Probable ATP-dependent RNA helicase DDX5 (EC 3.6.4.13) (DEAD box RNA helicase DEAD1) (mDEAD1) (DEAD box protein 5) (RNA helicase p68) |
| Gene Symbol | Ddx5 |
| Organism | Mus musculus (Mouse) |
| Length | 614 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 29733200 34200797 34884899 37925639 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MSSYSSDRDR11GRDRGFGAPR21FGGSRTGPLS31GKKFGNPGEK41LVKKKWNLDE
51-10051LPKFEKNFYQ61EHPDLARRTA71QEVDTYRRSK81EITVRGHNCP91KPVLNFYEAN
101-150101FPANVMDVIA111RQNFTEPTAI121QAQGWPVALS131GLDMVGVAQT141GSGKTLSYLL
151-200151PAIVHINHQP161FLERGDGPIC171LVLAPTRELA181QQVQQVAAEY191CRACRLKSTC
201-250201IYGGAPKGPQ211IRDLERGVEI221CIATPGRLID231FLECGKTNLR241RTTYLVLDEA
251-300251DRMLDMGFEP261QIRKIVDQIR271PDRQTLMWSA281TWPKEVRQLA291EDFLKDYIHI
301-350301NIGALELSAN311HNILQIVDVC321HDVEKDEKLI331RLMEEIMSEK341ENKTIVFVET
351-400351KRRCDELTRK361MRRDGWPAMG371IHGDKSQQER381DWVLNEFKHG391KAPILIATDV
401-450401ASRGLDVEDV411KFVINYDYPN421SSEDYIHRIG431RTARSTKTGT441AYTFFTPNNI
451-500451KQVSDLISVL461REANQAINPK471LLQLVEDRGS481GRSRGRGGMK491DDRRDRYSAG
501-550501KRGGFNTFRD511RENYDRGYSN521LLKRDFGAKT531QNGVYSAANY541TNGSFGSNFV
551-600551SAGIQTSFRT561GNPTGTYQNG571YDSTQQYGSN581VANMHNGMNQ591QAYAYPLPQA
601-614601APMIGYPMPT611GYSQ
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 89 | - | - | - |
Deep-Palm: 0.48
|
|
| 170 | SWISSPALM DBPTM CYSMODDB | DEAD/DEAH box helicase |
Liver
(28526873)
liver
(26165157)
|
Brain
(35358180)
|
GPS-Palm: 0.89
Deep-Palm: 0.96
|
| 191 | SWISSPALM DBPTM CYSMODDB | DEAD/DEAH box helicase |
Liver
(28526873)
|
Liver
(34884899)
|
Deep-Palm: 0.91
|
| 194 | - | - | - |
Deep-Palm: 0.83
|
|
| 200 | DEAD/DEAH box helicase |
Brain
(34200797)
|
Brain
(35358180)
|
GPS-Palm: 0.93
Deep-Palm: 0.88
|
|
| 221 | SWISSPALM DBPTM CYSMODDB | - |
Liver
(28526873)
| - |
GPS-Palm: 0.93
Deep-Palm: 0.96
|
| 234 | SWISSPALM DBPTM CYSMODDB | DEAD/DEAH box helicase |
Liver
(28526873)
| - |
GPS-Palm: 0.92
Deep-Palm: 0.97
|
| 320 | - | - | - |
Deep-Palm: 0.49
|
|
| 354 | - | - | - |
Deep-Palm: 0.30
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.625
5
Liver
Specificity: 0.357
5/5 (100.0%)
3
Brain
Specificity: 0.214
3/3 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
6
Brain tissue (Mass)
Specificity: 0.429
6/56 (10.7%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.