Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q61753 | Phgdh | D-3-phosphoglycerate dehydrogenase (3-PGDH) (EC 1.1.1.95) … | Mus musculus (Mouse) | 533 aa |
Protein Details: Q61753 (Phgdh)
Protein Information
| Accession | Q61753 |
|---|---|
| Protein Names | D-3-phosphoglycerate dehydrogenase (3-PGDH) (EC 1.1.1.95) (A10) |
| Gene Symbol | Phgdh |
| Organism | Mus musculus (Mouse) |
| Length | 533 aa |
| Isoforms | No isoforms |
| Related PMIDs | 29217618 29660268 29733200 34200797 35358180 35477839 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | SwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MAFANLRKVL11ISDSLDPCCR21KILQDGGLQV31VEKQNLSKEE41LIAELQDCEG
51-10051LIVRSATKVT61ADVINAAEKL71QVVGRAGTGV81DNVDLEAATR91KGILVMNTPN
101-150101GNSLSAAELT111CGMIMCLARQ121IPQATASMKD131GKWDRKKFMG141TELNGKTLGI
151-200151LGLGRIGREV161ATRMQSFGMK171TVGYDPIISP181EVAASFGVQQ191LPLEEIWPLC
201-250201DFITVHTPLL211PSTTGLLNDS221TFAQCKKGVR231VVNCARGGIV241DEGALLRALQ
251-300251SGQCAGAALD261VFTEEPPRDR271ALVDHENVIS281CPHLGASTKE291AQSRCGEEIA
301-350301VQFVDMVKGK311SLTGVVNAQA321LTSAFSPHTK331PWIGLAEAMG341TLMHAWAGSP
351-400351KGTIQVVTQG361TSLKNAGTCL371SPAVIVGLLR381EASKQADVNL391VNAKLLVKEA
401-450401GLNVTTSHNP411GVPGEQGSGE421CLLTVALAGA431PYQAVGLVQG441TTPMLQMLNG
451-500451AVFRPEVPLR461RGQPLLVFRA471QPSDPGMLPT481MIGLLAEAGV491QLLSYQTSMV
501-533501SDGEPWHVMG511LSSLLPSLET521WKQHVLEAFQ531FCF
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 18 | - |
Brain
(34200797)
|
Brain
(35358180)
|
GPS-Palm: 0.92
Deep-Palm: 0.98
|
|
| 19 | - |
Brain
(34200797)
|
Brain
(35358180)
|
Deep-Palm: 0.98
|
|
| 48 | D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Formate/glycerate dehydrogenase catalytic domain-like | - | - |
Deep-Palm: 0.97
|
|
| 111 | - | - | - |
Deep-Palm: 0.80
|
|
| 116 | - | - | - |
Deep-Palm: 0.92
|
|
| 200 | - | - | - |
Deep-Palm: 0.82
|
|
| 225 | - | - | - |
Deep-Palm: 0.95
|
|
| 234 | - | - | - |
Deep-Palm: 0.98
|
|
| 254 | - |
MLE
(39008777)
|
Brain
(35358180)
|
Deep-Palm: 0.98
|
|
| 281 | - |
MLE
(39008777)
|
Brain
(35358180)
|
Deep-Palm: 0.96
|
|
| 295 | - | - | - |
Deep-Palm: 0.88
|
|
| 369 | - |
Brain
(34200797)
|
Brain
(35358180)
|
Deep-Palm: 0.98
|
|
| 421 | - | - | - |
Deep-Palm: 0.94
|
|
| 532 | - | - | - |
GPS-Palm: 0.98
Deep-Palm: 0.01
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.625
5
Brain
Specificity: 0.167
5/5 (100.0%)
2
Testis
Specificity: 0.067
2/2 (100.0%)
1
Raw 264.7
Specificity: 0.033
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
22
Brain tissue (Mass)
Specificity: 0.733
22/56 (39.3%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.