Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q62167 | Ddx3x | ATP-dependent RNA helicase DDX3X (EC … | Mus musculus (Mouse) | 662 aa |
Protein Details: Q62167 (Ddx3x)
Protein Information
| Accession | Q62167 |
|---|---|
| Protein Names | ATP-dependent RNA helicase DDX3X (EC 3.6.4.13) (D1Pas1-related sequence 2) (DEAD box RNA helicase DEAD3) (mDEAD3) (DEAD box protein 3, X-chromosomal) (Embryonic RNA helicase) |
| Gene Symbol | Ddx3x |
| Organism | Mus musculus (Mouse) |
| Length | 662 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 29575903 29733200 34884899 37925639 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MSHVAVENAL11GLDQQFAGLD21LNSSDNQSGG31STASKGRYIP41PHLRNREATK
51-10051GFYDKDSSGW61SSSKDKDAYS71SFGSRGDSRG81KSSFFGDRGS91GSRGRFDDRG
101-150101RGDYDGIGGR111GDRSGFGKFE121RGGNSRWCDK131SDEDDWSKPL141PPSERLEQEL
151-200151FSGGNTGINF161EKYDDIPVEA171TGNNCPPHIE181SFSDVEMGEI191IMGNIELTRY
201-250201TRPTPVQKHA211IPIIKEKRDL221MACAQTGSGK231TAAFLLPILS241QIYADGPGEA
251-300251LRAMKENGRY261GRRKQYPISL271VLAPTRELAV281QIYEEARKFS291YRSRVRPCVV
301-350301YGGAEIGQQI311RDLERGCHLL321VATPGRLVDM331MERGKIGLDF341CKYLVLDEAD
351-400351RMLDMGFEPQ361IRRIVEQDTM371PPKGVRHTMM381FSATFPKEIQ391MLARDFLDEY
401-450401IFLAVGRVGS411TSENITQKVV421WVEEIDKRSF431LLDLLNATGK441DSLTLVFVET
451-500451KKGADSLEDF461LYHEGYACTS471IHGDRSQRDR481EEALHQFRSG491KSPILVATAV
501-550501AARGLDISNV511KHVINFDLPS521DIEEYVHRIG531RTGRVGNLGL541ATSFFNERNI
551-600551NITKDLLDLL561VEAKQEVPSW571LENMAFEHHY581KGSSRGRSKS591SRFSGGFGAR
601-650601DYRQSSGASS611SSFSSSRASS621SRSGGGGHGG631SRGFGGGGYG641GFYNSDGYGG
651-662651NYNSQGVDWW661GN
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 128 | - | - | - |
Deep-Palm: 0.56
|
|
| 175 | - | - | - |
Deep-Palm: 0.08
|
|
| 223 | SWISSPALM DBPTM CYSMODDB | DEAD/DEAH box helicase |
Liver
(28526873)
| - |
GPS-Palm: 0.92
Deep-Palm: 0.96
|
| 298 | SWISSPALM DBPTM CYSMODDB | DEAD/DEAH box helicase |
Liver
(28526873)
liver
(26165157)
brain
(39008777)
| - |
GPS-Palm: 0.95
Deep-Palm: 0.88
|
| 317 | SWISSPALM DBPTM CYSMODDB | DEAD/DEAH box helicase |
Liver
(28526873)
liver
(26165157)
MLE
(39008777)
| - |
GPS-Palm: 0.90
Deep-Palm: 0.96
|
| 341 | - | - | - |
Deep-Palm: 0.96
|
|
| 468 | - | - | - |
Deep-Palm: 0.74
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.750
6
Liver
Specificity: 0.545
6/6 (100.0%)
1
Raw 264.7
Specificity: 0.091
1/1 (100.0%)
1
Brain
Specificity: 0.091
1/1 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
3
Brain tissue (Mass)
Specificity: 0.273
3/56 (5.4%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.