Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q62465 | Vat1 | NADPH-dependent quinone oxidoreductase VAT1 (EC … | Mus musculus (Mouse) | 406 aa |
Protein Details: Q62465 (Vat1)
Protein Information
| Accession | Q62465 |
|---|---|
| Protein Names | NADPH-dependent quinone oxidoreductase VAT1 (EC 1.6.5.5) (Synaptic vesicle membrane protein VAT-1 homolog) (Vesicle amine transport 1) (VAT-1) |
| Gene Symbol | Vat1 |
| Organism | Mus musculus (Mouse) |
| Length | 406 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 34200797 35358180 37925639 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MSAEREAAEA11ATVAAATEAG21AETGTGAGEG31APSQPPTVEV41ASDPQPPPAP
51-10051EASASASAPP61LRCLVLTGFG71GYDKVKLQSR81PAVPPAPGPG91QLTLRVRACG
101-150101LNFADLMGRQ111GLYDRLPPLP121VTPGMEGAGV131VVAVGEGVGD141RKAGDRVMVL
151-200151NRSGMWQEEV161TVPSAQTFLM171PEAMTFEEAA181ALLVNYITAY191MVLFDFGNLR
201-250201PGHSVLVHMA211AGGVGMAALQ221LCRTVENVTV231FGTASASKHE241VLKENGVTHP
251-300251IDYHTTDYVD261EIKKISPKGV271DIVMDPLGGS281DTAKGYHLLK291PMGKVVTYGM
301-350301ANLLTGPKRN311LMAMARTWWN321QFSVTALQLL331QANRAVCGFH341LGYLDGEVEL
351-400351VNSVVTRLVA361LYNQGHIKPR371IDSVWPFEKV381ADAMKQMQEK391KNIGKVLLVP
401-406401GPEKET
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 63 | - |
MLE
(39008777)
|
Brain
(35358180)
|
Deep-Palm: 0.98
|
|
| 99 | SWISSPALM DBPTM CYSMODDB | - |
Liver
(28526873)
|
Brain
(35358180)
|
Deep-Palm: 0.97
|
| 222 | - | - | - |
Deep-Palm: 0.91
|
|
| 337 | - | - | - |
Deep-Palm: 0.97
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.500
3
Liver
Specificity: 0.115
3/3 (100.0%)
3
Brain
Specificity: 0.115
3/3 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
20
Brain tissue (Mass)
Specificity: 0.769
20/56 (35.7%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.