Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q676U5 | ATG16L1 | Autophagy-related protein 16-1 (APG16-like 1) | Homo sapiens (Human) | 607 aa |
Protein Details: Q676U5 (ATG16L1)
Protein Information
| Accession | Q676U5 |
|---|---|
| Protein Names | Autophagy-related protein 16-1 (APG16-like 1) |
| Gene Symbol | ATG16L1 |
| Organism | Homo sapiens (Human) |
| Length | 607 aa |
| Isoforms | No isoforms |
| Related PMIDs | No related PMIDs |
| Database Sources | SwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MSSGLRAADF11PRWKRHISEQ21LRRRDRLQRQ31AFEEIILQYN41KLLEKSDLHS
51-10051VLAQKLQAEK61HDVPNRHEIS71PGHDGTWNDN81QLQEMAQLRI91KHQEELTELH
101-150101KKRGELAQLV111IDLNNQMQRK121DREMQMNEAK131IAECLQTISD141LETECLDLRT
151-200151KLCDLERANQ161TLKDEYDALQ171ITFTALEGKL181RKTTEENQEL191VTRWMAEKAQ
201-250201EANRLNAENE211KDSRRRQARL221QKELAEAAKE231PLPVEQDDDI241EVIVDETSDH
251-300251TEETSPVRAI261SRAATKRLSQ271PAGGLLDSIT281NIFGRRSVSS291FPVPQDNVDT
301-350301HPGSGKEVRV311PATALCVFDA321HDGEVNAVQF331SPGSRLLATG341GMDRRVKLWE
351-400351VFGEKCEFKG361SLSGSNAGIT371SIEFDSAGSY381LLAASNDFAS391RIWTVDDYRL
401-450401RHTLTGHSGK411VLSAKFLLDN421ARIVSGSHDR431TLKLWDLRSK441VCIKTVFAGS
451-500451SCNDIVCTEQ461CVMSGHFDKK471IRFWDIRSES481IVREMELLGK491ITALDLNPER
501-550501TELLSCSRDD511LLKVIDLRTN521AIKQTFSAPG531FKCGSDWTRV541VFSPDGSYVA
551-600551AGSAEGSLYI561WSVLTGKVEK571VLSKQHSSSI581NAVAWSPSGS591HVVSVDKGCK
601-607601AVLWAQY
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 134 | - | - | - |
GPS-Palm: 0.71
Deep-Palm: 0.73
|
|
| 145 | - | - | - |
GPS-Palm: 0.67
Deep-Palm: 0.95
|
|
| 153 | SWISSPALM | Autophagy protein 16 (ATG16) | - | - |
GPS-Palm: 0.75
Deep-Palm: 0.94
|
| 316 | - | - | - |
GPS-Palm: 0.68
Deep-Palm: 0.86
|
|
| 356 | - | - | - |
Deep-Palm: 0.92
|
|
| 442 | - | - | - |
GPS-Palm: 0.77
Deep-Palm: 0.85
|
|
| 452 | - | - | - |
Deep-Palm: 0.11
|
|
| 457 | - | - | - |
Deep-Palm: 0.04
|
|
| 461 | - | - | - |
Deep-Palm: 0.06
|
|
| 506 | - | - | - |
GPS-Palm: 0.84
Deep-Palm: 0.96
|
|
| 533 | - | - | - |
Deep-Palm: 0.47
|
|
| 599 | - | - | - |
GPS-Palm: 0.83
Deep-Palm: 0.03
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Conservation score for cysteine
PhyloP for Cysteine
PhastCons Conservation Scores for Cysteine
TCGA Cysteine Mutation Information
Note: Mutations indicate amino acid changes that may create potential palmitoylation sites.
| Position | Amino Acid Change | Frequency | Type | Function | Cancer Type |
|---|---|---|---|---|---|
| 103 | R → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 134 | C → Y | 0.002020 | SNP | Missense Mutation | PRAD |
| 153 | C → C | 0.002747 | SNP | Silent | LIHC |
| 173 | F → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 286 | R → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 316 | C → R | 0.001887 | SNP | Missense Mutation | UCEC |
| 442 | C → G | 0.002545 | SNP | Missense Mutation | GBM |
| 471 | I → Cfs*34 | 0.002506 | INS | Frame Shift Ins | COAD |
| 472 | R → C | 0.002506 | SNP | Missense Mutation | COAD |
| 472 | R → C | 0.004283 | SNP | Missense Mutation | SKCM |
| 472 | R → C | 0.001887 | SNP | Missense Mutation | UCEC |
| 474 | W → C | 0.002506 | SNP | Missense Mutation | COAD |
| 508 | R → C | 0.002141 | SNP | Missense Mutation | SKCM |
| 533 | C → C | 0.001887 | SNP | Silent | UCEC |
| 461* | C → ? | 0.002288 | DEL | Frame Shift Del | STAD |