Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q68FD5 | Cltc | Clathrin heavy chain 1 | Mus musculus (Mouse) | 1675 aa |
Protein Details: Q68FD5 (Cltc)
Protein Information
| Accession | Q68FD5 |
|---|---|
| Protein Names | Clathrin heavy chain 1 |
| Gene Symbol | Cltc |
| Organism | Mus musculus (Mouse) |
| Length | 1675 aa |
| Isoforms | No isoforms |
| Related PMIDs | 28526873 29733200 31311849 34200797 34884899 35358180 37925639 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MAQILPIRFQ11EHLQLQNLGI21NPANIGFSTL31TMESDKFICI41REKVGEQAQV
51-10051VIIDMNDPSN61PIRRPISADS71AIMNPASKVI81ALKAGKTLQI91FNIEMKSKMK
101-150101AHTMTDDVTF111WKWISLNTVA121LVTDNAVYHW131SMEGESQPVK141MFDRHSSLAG
151-200151CQIINYRTDA161KQKWLLLTGI171SAQQNRVVGA181MQLYSVDRKV191SQPIEGHAAS
201-250201FAQFKMEGNA211EESTLFCFAV221RGQAGGKLHI231IEVGTPPTGN241QPFPKKAVDV
251-300251FFPPEAQNDF261PVAMQISEKH271DVVFLITKYG281YIHLYDLETG291TCIYMNRISG
301-350301ETIFVTAPHE311ATAGIIGVNR321KGQVLSVCVE331EENIIPYITN341VLQNPDLALR
351-400351MAVRNNLAGA361EELFARKFNA371LFAQGNYSEA381AKVAANAPKG391ILRTPDTIRR
401-450401FQSVPAQPGQ411TSPLLQYFGI421LLDQGQLNKY431ESLELCRPVL441QQGRKQLLEK
451-500451WLKEDKLECS461EELGDLVKSV471DPTLALSVYL481RANVPNKVIQ491CFAETGQVQK
501-550501IVLYAKKVGY511TPDWIFLLRN521VMRISPDQGQ531QFAQMLVQDE541EPLADITQIV
551-600551DVFMEYNLIQ561QCTAFLLDAL571KNNRPSEGPL581QTRLLEMNLM591HAPQVADAIL
601-650601GNQMFTHYDR611AHIAQLCEKA621GLLQRALEHF631TDLYDIKRAV641VHTHLLNPEW
651-700651LVNYFGSLSV661EDSLECLRAM671LSANIRQNLQ681ICVQVASKYH691EQLSTQSLIE
701-750701LFESFKSFEG711LFYFLGSIVN721FSQDPDVHFK731YIQAACKTGQ741IKEVERICRE
751-800751SNCYDPERVK761NFLKEAKLTD771QLPLIIVCDR781FDFVHDLVLY791LYRNNLQKYI
801-850801EIYVQKVNPS811RLPVVIGGLL821DVDCSEDVIK831NLILVVRGQF841STDELVAEVE
851-900851KRNRLKLLLP861WLEARIHEGC871EEPATHNALA881KIYIDSNNNP891ERFLRENPYY
901-950901DSRVVGKYCE911KRDPHLACVA921YERGQCDLEL931INVCNENSLF941KSLSRYLVRR
951-1000951KDPELWGSVL961LESNPYRRPL971IDQVVQTALS981ETQDPEEVSV991TVKAFMTADL
1001-10501001PNELIELLEK1011IVLDNSVFSE1021HRNLQNLLIL1031TAIKADRTRV1041MEYINRLDNY
1051-11001051DAPDIANIAI1061SNELFEEAFA1071IFRKFDVNTS1081AVQVLIEHIG1091NLDRAYEFAE
1101-11501101RCNEPAVWSQ1111LAKAQLQKGM1121VKEAIDSYIK1131ADDPSSYMEV1141VQAANASGNW
1151-12001151EELVKYLQMA1161RKKARESYVE1171TELIFALAKT1181NRLAELEEFI1191NGPNNAHIQQ
1201-12501201VGDRCYDEKM1211YDAAKLLYNN1221VSNFGRLAST1231LVHLGEYQAA1241VDGARKANST
1251-13001251RTWKEVCFAC1261VDGKEFRLAQ1271MCGLHIVVHA1281DELEELINYY1291QDRGYFEELI
1301-13501301TMLEAALGLE1311RAHMGMFTEL1321AILYSKFKPQ1331KMREHLELFW1341SRVNIPKVLR
1351-14001351AAEQAHLWAE1361LVFLYDKYEE1371YDNAIITMMN1381HPTDAWKEGQ1391FKDIITKVAN
1401-14501401VELYYKAIQF1411YLEFKPLLLN1421DLLMVLSPRL1431DHTRAVNYFS1441KVKQLPLVKP
1451-15001451YLRSVQNHNN1461KSVNESLNNL1471FITEEDYQAL1481RTSIDAYDNF1491DNISLAQRLE
1501-15501501KHELIEFRRI1511AAYLFKGNNR1521WKQSVELCKK1531DSLYKDAMQY1541ASESKDTELA
1551-16001551EELLQWFLQE1561EKRECFGACL1571FTCYDLLRPD1581VVLETAWRHN1591IMDFAMPYFI
1601-16501601QVMKEYLTKV1611DKLDASESLR1621KEEEQATETQ1631PIVYGQPQLM1641LTAGPSVAVP
1651-16751651PQAPFGYGYT1661APPYGQPQPG1671FGYSM
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 39 | CLATHRIN HEAVY CHAIN RELATED Clathrin heavy chain, N-terminal Clathrin, heavy chain, propeller repeat | - | - |
Deep-Palm: 0.87
|
|
| 151 | SWISSPALM DBPTM CYSMODDB | - |
Liver
(28526873)
|
Brain
(35358180)
|
Deep-Palm: 0.74
|
| 217 | - | - |
Brain
(35358180)
|
Deep-Palm: 0.87
|
|
| 292 | - | - |
Brain
(35358180)
|
Deep-Palm: 0.16
|
|
| 328 | - | - | - |
Deep-Palm: 0.86
|
|
| 436 | SWISSPALM DBPTM CYSMODDB | - |
Liver
(28526873)
|
Brain
(35358180)
|
Deep-Palm: 0.98
|
| 459 | SWISSPALM DBPTM CYSMODDB | - |
Liver
(28526873)
Brain
(31311849)
|
Brain
(35358180)
Brain
(31311849)
|
Deep-Palm: 0.98
|
| 491 | SWISSPALM DBPTM CYSMODDB | - |
Liver
(28526873)
|
Brain
(35358180)
|
Deep-Palm: 0.92
|
| 562 | - | - | - |
Deep-Palm: 0.48
|
|
| 617 | Region in Clathrin and VPS |
Brain
(31311849)
|
Brain
(35358180)
Brain
(31311849)
|
Deep-Palm: 0.85
|
|
| 666 | - | - | - |
Deep-Palm: 0.94
|
|
| 682 | - | - | - |
Deep-Palm: 0.82
|
|
| 736 | - | - |
Brain
(35358180)
|
Deep-Palm: 0.56
|
|
| 748 | - | - | - |
Deep-Palm: 0.49
|
|
| 753 | SWISSPALM DBPTM CYSMODDB | Region in Clathrin and VPS |
Liver
(28526873)
|
Brain
(35358180)
|
Deep-Palm: 0.95
|
| 778 | SWISSPALM DBPTM CYSMODDB | Region in Clathrin and VPS |
Liver
(28526873)
|
Brain
(35358180)
|
Deep-Palm: 0.96
|
| 824 | - | - |
Brain
(35358180)
|
Deep-Palm: 0.96
|
|
| 870 | Region in Clathrin and VPS |
Brain
(31311849)
|
Brain
(35358180)
Brain
(31311849)
|
Deep-Palm: 0.98
|
|
| 909 | - | - | - |
Deep-Palm: 0.89
|
|
| 918 | Region in Clathrin and VPS |
Brain
(31311849)
brain
(39008777)
MLE
(39008777)
|
Brain
(35358180)
Brain
(31311849)
|
Deep-Palm: 0.90
|
|
| 926 | SWISSPALM DBPTM CYSMODDB | Region in Clathrin and VPS |
Liver
(28526873)
MLE
(39008777)
|
Brain
(35358180)
Brain
(31311849)
|
Deep-Palm: 0.41
|
| 934 | SWISSPALM DBPTM CYSMODDB | Region in Clathrin and VPS |
Liver
(28526873)
MLE
(39008777)
|
Brain
(35358180)
|
Deep-Palm: 0.91
|
| 1102 | - |
Brain
(34200797)
|
Brain
(35358180)
|
Deep-Palm: 0.66
|
|
| 1205 | - | - | - |
Deep-Palm: 0.08
|
|
| 1257 | SWISSPALM DBPTM CYSMODDB | - |
Liver
(28526873)
|
Brain
(35358180)
|
Deep-Palm: 0.75
|
| 1260 | - |
Liver
(28526873)
|
Brain
(35358180)
|
Deep-Palm: 0.51
|
|
| 1272 | - | - | - |
Deep-Palm: 0.86
|
|
| 1528 | Region in Clathrin and VPS |
Brain
(34200797)
| - |
Deep-Palm: 0.70
|
|
| 1565 | - | - | - |
Deep-Palm: 0.80
|
|
| 1569 | - | - | - |
Deep-Palm: 0.71
|
|
| 1573 | - | - | - |
Deep-Palm: 0.94
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.500
5
Liver
Specificity: 0.111
5/5 (100.0%)
5
Brain
Specificity: 0.111
5/5 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
35
Brain tissue (Mass)
Specificity: 0.778
35/56 (62.5%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.