Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q6IBM8 | U5-116KD | 116 kDa U5 small nuclear … | Homo sapiens (Human) | 972 aa |
Protein Details: Q6IBM8 (U5-116KD)
Protein Information
| Accession | Q6IBM8 |
|---|---|
| Protein Names | 116 kDa U5 small nuclear ribonucleoprotein component (U5 snRNP-specific protein, 116 kDa) |
| Gene Symbol | U5-116KD |
| Organism | Homo sapiens (Human) |
| Length | 972 aa |
| Isoforms | No isoforms |
| Related PMIDs | 36430497 |
| Database Sources | No database sources |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MDTDLYDEFG11NYIGPELDSD21EDDDELGRET31KDLDEMDDDD41DDDDVGDHDD
51-10051DHPGMEVVLH61EDKKYYPTAE71EVYGPEVETI81VQEEDTQPLT91EPIIKPVKTK
101-150101KFTLMEQTLP111VTVYEMDFLA121DLMDNSELIR131NVTLCGHLHH141GKTCFVDCLI
151-200151EQTHPEIRKR161YDQDLCYTDI171LFTEQERGVG181IKSTPVTVVL191PDTKGKSYLF
201-250201NIMDTPGHVN211FSDEVTAGLR221ISDGVVLFID231AAEGVMLNTE241RLIKHAVQER
251-300251LAVTVCINKI261DRLILELKLP271PTDAYYKLRH281IVDEVNGLIS291MYSTDENLIL
301-350301SPLLGNVCFS311SSQYSICFTL321VSFAKIYADT331FGDINYQEFA341KRLWGDIYFN
351-400351PKTRKFTKKA361PTSSSQRSFV371EFILEPLYKI381LAQVVGDVDT391SLPRTLDELG
401-450401IHLTKEELKL411NIRPLLRLVC421KKFFGEFTGF431VDMCVQHIPS441PKVGAKPKIE
451-500451HTYTGGVDSD461LGEAMSDCDP471DGPLMCHTTK481MYSTDDGVQF491HAFGRVLSGT
501-550501IHAGQPVKVL511GENYTLEDEE521DSQICTVGRL531WISVARYHIE541VNRVPAGNWV
551-600551LIEGVDQPIV561KTATITEPRG571NEEAQIFRPL581KFNTTSVIKI591AVEPVNPSEL
601-650601PKMLDGLRKV611NKSYPSLTTK621VEESGEHVIL631GTGELYLDCV641MHDLRKMYSE
651-700651IDIKVADPVV661TFCETVVETS671SLKCFAETPN681KKNKITMIAE691PLEKGLAEDI
701-750701ENEVVQITWN711RKKLGEFFQT721KYDWDLLAAR731SIWAFGPDAT741GPNILVDDTL
751-800751PSEVDKALLG761SVKDSIVQGF771QWGTREGPLC781DELIRNVKFK791ILDAVVAQEP
801-850801LHRGGGQIIP811TARRVVYSAF821LMATPRLMEP831YYFVEVQAPA841DCVSAVYTVL
851-900851ARRRGHVTQD861APIPGSPLYT871IKAFIPAIDS881FGFETDLRTH891TQGQAFSLSV
901-950901FHHWQIVPGD911PLDKSIVIRP921LEPQPAPHLA931REFMIKTRRR941KGLSEDVSIS
951-972951KFFDDPMLLE961LAKQDVVLNY971PI
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 135 | - | - | - |
Deep-Palm: 0.62
|
|
| 144 | - | - | - |
Deep-Palm: 0.47
|
|
| 148 | - | - | - |
Deep-Palm: 0.35
|
|
| 166 | - | - |
Unknown
(32651440)
|
Deep-Palm: 0.54
|
|
| 256 | - | - | - |
Deep-Palm: 0.97
|
|
| 308 | - | - | - |
Deep-Palm: 0.92
|
|
| 317 | - | - | - |
Deep-Palm: 0.68
|
|
| 420 | - | - | - |
Deep-Palm: 0.97
|
|
| 434 | - | - | - |
Deep-Palm: 0.56
|
|
| 468 | - | - | - |
Deep-Palm: 0.12
|
|
| 476 | - | - | - |
Deep-Palm: 0.04
|
|
| 525 | - | - | - |
Deep-Palm: 0.89
|
|
| 639 | - | - | - |
Deep-Palm: 0.93
|
|
| 663 | - | - |
LNCaP
(31251020)
|
Deep-Palm: 0.76
|
|
| 674 | - | - | - |
Deep-Palm: 0.71
|
|
| 780 | - | - | - |
Deep-Palm: 0.91
|
|
| 842 | - | - | - |
Deep-Palm: 0.84
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
4
cerebral cortex
Specificity: 1.000
4/4 (100.0%)
Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.