Search Database
Select Protein (1 found)
| UniProt ID | Gene Symbol | Protein Name | Organism | Length | Action |
|---|---|---|---|---|---|
| Q6NZD2 | Snx1 | Sorting nexin-1 | Mus musculus (Mouse) | 521 aa |
Protein Details: Q6NZD2 (Snx1)
Protein Information
| Accession | Q6NZD2 |
|---|---|
| Protein Names | Sorting nexin-1 |
| Gene Symbol | Snx1 |
| Organism | Mus musculus (Mouse) |
| Length | 521 aa |
| Isoforms | No isoforms |
| Related PMIDs | 29217618 (mass) 31311849 (mass) 31772009 (mass) 34884899 (mass) 35358180 (mass) 37925639 (mass) |
| Database Sources | CysModDBdbPTMSwissPalm |
These studies detected palmitoylation of this protein in the samples.
Protein Sequence
Types:
Experimental Database High Prediction Non-palmitylated Cys
Experimental Database High Prediction Non-palmitylated Cys
1-501MASGGGGCSA11SERLPPPFPG21MDPESEGAAG31GSEPEAGDSD41TEGEDIFTGA
51-10051AAATKPQSPK61KTTSLFPIKN71GSKENGIHED81QDQEPQDLFA91DATVELSLDS
101-150101TQNNQKTMPG111KTLTSHPPQE121ATNSPKPQPS131YEELEEEQED141QFDLTVGITD
151-200151PEKIGDGMNA161YVAYKVTTQT171SLPMFRSRQF181AVKRRFSDFL191GLYEKLSEKH
201-250201SQNGFIVPPP211PEKSLIGMTK221VKVGKEDSSS231AEFLEKRRAA241LERYLQRIVN
251-300251HPTMLQDPDV261REFLEKEELP271RAVGTQALSG281AGLLKMFNKA291TDAVSKMTIK
301-350301MNESDIWFEE311KLQEVECEEQ321RLRKLHAVVE331TLVNHRKELA341LNTALFAKSL
351-400351AMLGSSEDNT361ALSRALSQLA371EVEEKIEQLH381QEQANNDFFL391LAELLSDYIR
401-450401LLAIVRAAFD411QRMKTWQRWQ421DAQATLQKKR431ESEARLLWAN441KPDKLQQAKD
451-500451EITEWESRVT461QYERDFERIS471TVVRKEVTRF481EKEKSKDFKN491HVMKYLETLL
501-521501HSQQQLAKYW511EAFLPEAKAI521S
Palmitoylation Sites Details
| Position | Database | Domains | Literature (PMID/Cell-Tissue) | Mass(PMID/Cell-Tissue) | Prediction Scores |
|---|---|---|---|---|---|
| 8 | - | - |
Brain
(35358180)
|
Deep-Palm: 0.05
|
|
| 317 | SWISSPALM DBPTM CYSMODDB | Vps5 C terminal like |
Forebrain
(28680068)
|
Brain
(35358180)
|
Deep-Palm: 0.93
|
Score Interpretation:
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
• GPS-Palm: Thresholds - High (≥0.8920), Medium (≥0.7766), Low (≥0.6484), Very Low (<0.6484)
• Deep-Palm: Higher score indicates higher probability of palmitoylation (High ≥0.9)
Tissue/Cell Line Expression
Literature Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 0.000Mass Spectrometry Data - Tissue/Cell Line Expression
Tissue Specificity Index (TSI): 1.000
15
Brain tissue (Mass)
Specificity: 1.000
15/56 (26.8%)
Palmitoylation Distribution by Study and Tissue/Cell Line
Chart Explanation: Each bar represents a study (PMID).
Blue bars: Literature data, Orange bars: Mass Spectrometry data.
The colored bottom segment shows palmitoylated samples, while the gray top segment shows non-palmitoylated samples.